Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr4 | 25160707 | . | C | A | CCDS3432.2:NM_016955.3:c.137tGg>tTg_NP_058651.3:p.46W>L | Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3hl2 | 1 | Q9HD40 | 100.0 | 0.0 |
X-RAY |
2009-10-06 | TRP | A:46 | A:46 | 15.0 | 0.059 | -73.2 | 154.7 | 15.0 | 0.059 | 0.0 |
HOH |
3.385 |
CA |
O |
|||
| TRP | B:46 | B:46 | 18.0 | 0.071 | -71.9 | 165.7 | 18.0 | 0.071 | 0.0 |
HOH |
3.761 |
C |
O |
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| TRP | C:46 | C:46 | 14.0 | 0.055 | -73.5 | 155.0 | NA | NA | NA | ||||||||||||||
| TRP | D:46 | D:46 | 17.0 | 0.067 | -70.0 | 161.1 | NA | NA | NA | ||||||||||||||
| 4zdl | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | TRP | A:46 | A:46 | 15.0 | 0.059 | -76.1 | 148.2 | 15.0 | 0.059 | 0.0 |
HOH |
2.971 |
NE1 |
O |
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| TRP | B:46 | B:46 | 16.0 | 0.063 | -72.6 | 150.1 | 16.0 | 0.063 | 0.0 |
HOH |
2.687 |
O |
O |
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| 4zdo | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | TRP | A:46 | A:46 | 17.0 | 0.067 | -71.3 | 149.3 | 17.0 | 0.067 | 0.0 |
HOH |
3.190 |
NE1 |
O |
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| TRP | B:46 | B:46 | 14.0 | 0.055 | -66.3 | 151.4 | 14.0 | 0.055 | 0.0 |
HOH |
2.559 |
O |
O |
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| TRP | C:46 | C:46 | 16.0 | 0.063 | -64.3 | 150.0 | NA | NA | NA | ||||||||||||||
| TRP | D:46 | D:46 | 15.0 | 0.059 | -67.6 | 153.3 | NA | NA | NA | ||||||||||||||
| 4zdp | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | TRP | A:46 | A:46 | 16.0 | 0.063 | -62.9 | 152.5 | 16.0 | 0.063 | 0.0 |
HOH |
3.117 |
CA |
O |
|||
| TRP | B:46 | B:46 | 13.0 | 0.051 | -69.6 | 149.8 | 13.0 | 0.051 | 0.0 |
HOH |
2.792 |
O |
O |
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| TRP | C:46 | C:46 | 16.0 | 0.063 | -65.6 | 155.9 | NA | NA | NA | ||||||||||||||
| TRP | D:46 | D:46 | 16.0 | 0.063 | -69.3 | 155.6 | NA | NA | NA | ||||||||||||||
| 3bc8 | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | TRP | A:28 | A:46 | 16.0 | 0.063 | -67.0 | 144.9 | 16.0 | 0.063 | 0.0 |
HOH |
2.747 |
O |
O |
|||
| 3bca | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | TRP | A:28 | A:46 | 15.0 | 0.059 | -68.9 | 147.0 | 15.0 | 0.059 | 0.0 |
IOD IOD IOD HOH |
9.898 5.321 7.402 2.664 |
N O O O |
I I I O |
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| 3bcb | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | TRP | A:28 | A:46 | 14.0 | 0.055 | -68.4 | 144.3 | 14.0 | 0.055 | 0.0 |
HOH |
2.760 |
O |
O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q9hd40-f1 | 1 | Q9HD40 | 100.0 | 0.0 | TRP | A:46 | A:46 | 15.0 | 0.059 | -76.2 | 144.5 | ||