Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25161889 . G A CCDS3432.2:NM_016955.3:c.103Ctt>Ttt_NP_058651.3:p.35L>F Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 LEU A:35 A:35 6.0 0.035 H -64.9 -54.5 6.0 0.035 0.0 G
U
C
C
HOH
 9.382
9.012
8.105
8.553
8.959
 N
O
N
N
CD1
 OP1
O2'
O2'
C5'
O
LEU B:35 B:35 5.0 0.029 H -66.6 -43.4 5.0 0.029 0.0 HOH
 7.934
 O
 O
LEU C:35 C:35 6.0 0.035 H -72.0 -37.0 NA NA NA
LEU D:35 D:35 6.0 0.035 H -67.3 -39.4 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 LEU A:35 A:35 5.0 0.029 H -64.1 -54.2 5.0 0.029 0.0 HOH
 3.985
 CA
 O
LEU B:35 B:35 6.0 0.035 H -66.8 -43.5 6.0 0.035 0.0 HOH
 3.741
 CA
 O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 LEU A:35 A:35 6.0 0.035 H -66.5 -45.4 6.0 0.035 0.0 G
U
C
C
HOH
 9.372
9.223
8.080
8.595
3.760
 N
O
N
N
CA
 OP1
O2'
O2'
C5'
O
LEU B:35 B:35 4.0 0.024 H -63.9 -49.3 4.0 0.024 0.0 HOH
 5.113
 O
 O
LEU C:35 C:35 5.0 0.029 H -70.3 -45.8 NA NA NA
LEU D:35 D:35 8.0 0.047 H -75.7 -29.4 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 LEU A:35 A:35 4.0 0.024 H -72.7 -40.8 4.0 0.024 0.0 G
U
C
C
HOH
 9.374
9.277
8.281
8.706
4.109
 N
O
N
N
N
 OP1
O2'
O2'
C5'
O
LEU B:35 B:35 4.0 0.024 H -79.2 -37.2 4.0 0.024 0.0 HOH
 8.205
 N
 O
LEU C:35 C:35 5.0 0.029 H -74.4 -36.4 NA NA NA
LEU D:35 D:35 7.0 0.041 H -80.8 -38.7 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 LEU A:17 A:35 4.0 0.024 H -67.2 -46.1 4.0 0.024 0.0 HOH
 3.649
 CA
 O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 LEU A:17 A:35 6.0 0.035 H -60.3 -45.2 6.0 0.035 0.0 IOD
IOD
IOD
HOH
 9.181
4.952
7.703
3.798
 CD1
O
C
CA
 I
I
I
O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 LEU A:17 A:35 5.0 0.029 H -57.3 -47.3 5.0 0.029 0.0 HOH
 3.601
 CA
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 LEU A:35 A:35 6.0 0.035 H -61.4 -48.8