Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25161898 . T A CCDS3432.2:NM_016955.3:c.94Ata>Tta_NP_058651.3:p.32I>L Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 ILE A:32 A:32 23.0 0.131 H -70.3 -48.8 23.0 0.131 0.0 U
G
C
C
HOH
 9.864
9.374
9.827
9.760
4.862
 N
C
O
N
CD1
 C5'
OP1
O2'
C5'
O
ILE B:32 B:32 23.0 0.131 H -71.5 -55.0 23.0 0.131 0.0 HOH
 8.022
 N
 O
ILE C:32 C:32 24.0 0.137 H -68.2 -46.9 NA NA NA
ILE D:32 D:32 21.0 0.12 H -71.2 -50.6 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 ILE A:32 A:32 21.0 0.12 H -67.8 -47.0 21.0 0.12 0.0 HOH
 4.120
 CG2
 O
ILE B:32 B:32 21.0 0.12 H -79.3 -42.4 21.0 0.12 0.0 HOH
 4.894
 N
 O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 ILE A:32 A:32 23.0 0.131 H -70.4 -39.8 23.0 0.131 0.0 U
G
C
C
HOH
 9.841
9.260
9.858
9.797
5.001
 N
C
O
N
N
 O3'
OP1
O2'
C5'
O
ILE B:32 B:32 25.0 0.143 H -74.9 -43.8 25.0 0.143 0.0 HOH
 8.039
 N
 O
ILE C:32 C:32 18.0 0.103 H -68.0 -42.8 NA NA NA
ILE D:32 D:32 24.0 0.137 H -72.8 -43.2 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 ILE A:32 A:32 23.0 0.131 H -76.3 -48.6 23.0 0.131 0.0 U
G
C
HOH
 9.707
9.623
9.947
4.813
 N
C
N
N
 C5'
OP1
C5'
O
ILE B:32 B:32 17.0 0.097 H -74.8 -43.0 17.0 0.097 0.0 HOH
 7.491
 C
 O
ILE C:32 C:32 17.0 0.097 H -72.1 -49.0 NA NA NA
ILE D:32 D:32 22.0 0.126 H -73.7 -39.1 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 ILE A:14 A:32 21.0 0.12 H -66.0 -45.9 21.0 0.12 0.0 HOH
 3.832
 CD1
 O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 ILE A:14 A:32 7.0 0.04 H -60.5 -48.1 7.0 0.04 0.0 IOD
IOD
IOD
HOH
 8.113
8.961
7.738
3.645
 CD1
O
O
CD1
 I
I
I
O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 ILE A:14 A:32 21.0 0.12 H -65.6 -46.1 21.0 0.12 0.0 HOH
 4.110
 CD1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 ILE A:32 A:32 24.0 0.137 H -60.7 -47.5