Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25161907 . C A CCDS3432.2:NM_016955.3:c.85Gag>Tag_NP_058651.3:p.29E>* Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 GLU A:29 A:29 71.0 0.374 H -50.0 -41.0 71.0 0.374 0.0 G
C
C
G
G
C
U
G
C
C
HOH
 9.968
7.306
7.035
9.744
9.353
7.594
7.478
8.218
9.823
9.157
3.493
 N
OE1
OE1
OE1
OE1
OE1
C
O
O
O
CG
 O3'
O3'
OP1
N2
O2'
O2'
C5'
OP1
O3'
OP1
O
GLU B:29 B:29 69.0 0.363 H -60.7 -39.6 69.0 0.363 0.0 HOH
 8.502
 N
 O
GLU C:29 C:29 54.0 0.284 H -44.3 -48.8 NA NA NA
GLU D:29 D:29 93.0 0.489 H -52.8 -42.0 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 GLU A:29 A:29 48.0 NA H -66.5 -33.8 48.0 NA NA HOH
 5.807
 CB
 O
GLU B:29 B:29 90.0 0.474 H -54.7 -46.1 90.0 0.474 0.0 HOH
 7.097
 OE2
 O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 GLU A:29 A:29 39.0 NA H -48.8 -24.5 39.0 NA NA C
C
C
U
G
C
C
HOH
 8.248
8.210
8.710
7.501
7.962
9.845
8.963
8.143
 N
CB
CB
C
O
O
O
O
 OP1
OP1
O2'
C5'
OP1
O3'
OP1
O
GLU B:29 B:29 85.0 0.447 H -67.1 -31.9 85.0 0.447 0.0 HOH
 7.715
 N
 O
GLU C:29 C:29 95.0 0.5 H -54.3 -38.6 NA NA NA
GLU D:29 D:29 60.0 0.316 H -71.6 -35.3 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 GLU A:29 A:29 42.0 NA H -57.4 -32.4 42.0 NA NA C
C
C
U
G
C
HOH
 8.404
8.070
8.045
7.485
8.471
9.324
7.261
 N
CB
CB
C
O
O
N
 OP1
OP1
O2'
C5'
OP1
OP1
O
GLU B:29 B:29 72.0 0.379 H -66.8 -28.0 70.0 0.368 0.011 A:Q9HD40:0.011
 HOH
 5.574
 O
 O
GLU C:29 C:29 41.0 NA H -56.2 -34.2 NA NA NA
GLU D:29 D:29 83.0 0.437 H -64.3 -28.9 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 GLU A:11 A:29 73.0 0.384 H -55.3 -41.7 73.0 0.384 0.0 HOH
 2.643
 OE1
 O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 GLU A:11 A:29 62.0 0.326 H -59.2 -35.3 62.0 0.326 0.0 IOD
IOD
IOD
IOD
HOH
 3.368
9.724
9.568
9.551
2.224
 CG
OE1
N
OE2
OE2
 I
I
I
I
O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 GLU A:11 A:29 69.0 0.363 H -58.6 -41.3 69.0 0.363 0.0 HOH
 3.712
 CG
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 GLU A:29 A:29 80.0 0.421 H -60.7 -35.3