Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 44709841 . G A CCDS3469.1:NM_138335.2:c.697Ccc>Tcc_NP_612208.1:p.233P>S Homo sapiens glucosamine-6-phosphate deaminase 2 (GNPDA2), transcript variant 1, mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ne7 1 P46926 87.96 0.0 X-RAY
 2003-09-23 PRO A:233 A:233 125.0 0.862 S -73.2 -18.2 87.0 0.6 0.262 B:P46926:0.262
 16G
HOH
 4.810
2.790
 O
O
 O3P
O
PRO B:233 B:233 125.0 0.862 S -69.5 -21.3 83.0 0.572 0.29 C:P46926:0.29
 16G
HOH
 4.585
2.786
 O
O
 O3P
O
PRO C:233 C:233 124.0 0.855 S -68.9 -21.6 85.0 0.586 0.269 A:P46926:0.269
 16G
HOH
 4.680
2.817
 O
O
 O1P
O
PRO D:233 D:233 126.0 0.869 S -74.2 -17.5 86.0 0.593 0.276 E:P46926:0.276
 16G
HOH
 4.842
2.791
 O
O
 O1P
O
PRO E:233 E:233 127.0 0.876 S -68.1 -23.9 87.0 0.6 0.276 F:P46926:0.276
 16G
HOH
 4.694
2.834
 O
O
 O1P
O
PRO F:233 F:233 127.0 0.876 S -73.0 -19.7 87.0 0.6 0.276 D:P46926:0.276
 16G
HOH
 4.706
2.902
 O
O
 O1P
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8tdq7-f1 1 Q8TDQ7 100.0 0.0 PRO A:233 A:233 126.0 0.869 T -65.7 -24.6
af-p46926-f1 1 P46926 87.96 0.0 PRO A:233 A:233 114.0 0.786 T -63.9 -25.0