Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 44709861 . A C CCDS3469.1:NM_138335.2:c.677gTt>gGt_NP_612208.1:p.226V>G Homo sapiens glucosamine-6-phosphate deaminase 2 (GNPDA2), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ne7 1 P46926 87.96 0.0 X-RAY
 2003-09-23 VAL A:226 A:226 0.0 0.0 G -67.1 -18.7 0.0 0.0 0.0 AGP
HOH
 6.931
2.814
 CG2
O
 O3
O
VAL B:226 B:226 0.0 0.0 G -68.1 -15.8 0.0 0.0 0.0 AGP
HOH
 7.704
2.873
 CG2
O
 O3
O
VAL C:226 C:226 1.0 0.006 G -68.1 -15.8 1.0 0.006 0.0 AGP
HOH
 7.568
2.880
 CG2
O
 O4
O
VAL D:226 D:226 1.0 0.006 G -67.8 -14.7 1.0 0.006 0.0 AGP
HOH
 7.353
2.802
 CG2
O
 O3
O
VAL E:226 E:226 1.0 0.006 G -67.8 -17.1 1.0 0.006 0.0 AGP
HOH
 7.599
2.839
 CG2
O
 O3
O
VAL F:226 F:226 1.0 0.006 G -70.0 -16.0 1.0 0.006 0.0 AGP
HOH
 7.123
2.844
 CG2
O
 O3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8tdq7-f1 1 Q8TDQ7 100.0 0.0 VAL A:226 A:226 0.0 0.0 G -60.4 -24.6
af-p46926-f1 1 P46926 87.96 0.0 VAL A:226 A:226 0.0 0.0 G -53.7 -29.2