Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 44713035 . C A CCDS3469.1:NM_138335.2:c.529Gat>Tat_NP_612208.1:p.177D>Y Homo sapiens glucosamine-6-phosphate deaminase 2 (GNPDA2), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ne7 1 P46926 87.96 0.0 X-RAY
2003-09-23 GLU A:177 A:177 104.0 0.547 -102.7 125.4 104.0 0.547 0.0 HOH
3.352
CG
O
GLU B:177 B:177 97.0 0.511 -95.6 124.2 97.0 0.511 0.0 HOH
3.792
CA
O
GLU C:177 C:177 87.0 0.458 -103.0 123.3 87.0 0.458 0.0 HOH
3.694
CG
O
GLU D:177 D:177 83.0 0.437 -101.4 115.8 83.0 0.437 0.0 HOH
3.253
OE2
O
GLU E:177 E:177 114.0 0.6 -95.1 128.6 114.0 0.6 0.0 HOH
6.969
N
O
GLU F:177 F:177 98.0 0.516 -91.5 106.4 98.0 0.516 0.0 HOH
2.865
OE2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8tdq7-f1 1 Q8TDQ7 100.0 0.0 ASP A:177 A:177 61.0 0.407 -97.3 111.9
af-p46926-f1 1 P46926 87.96 0.0 GLU A:177 A:177 87.0 0.458 -93.1 111.4