Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr4 | 44713035 | . | C | A | CCDS3469.1:NM_138335.2:c.529Gat>Tat_NP_612208.1:p.177D>Y | Homo sapiens glucosamine-6-phosphate deaminase 2 (GNPDA2), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1ne7 | 1 | P46926 | 87.96 | 0.0 |
X-RAY |
2003-09-23 | GLU | A:177 | A:177 | 104.0 | 0.547 | -102.7 | 125.4 | 104.0 | 0.547 | 0.0 |
HOH |
3.352 |
CG |
O |
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GLU | B:177 | B:177 | 97.0 | 0.511 | -95.6 | 124.2 | 97.0 | 0.511 | 0.0 |
HOH |
3.792 |
CA |
O |
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GLU | C:177 | C:177 | 87.0 | 0.458 | -103.0 | 123.3 | 87.0 | 0.458 | 0.0 |
HOH |
3.694 |
CG |
O |
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GLU | D:177 | D:177 | 83.0 | 0.437 | -101.4 | 115.8 | 83.0 | 0.437 | 0.0 |
HOH |
3.253 |
OE2 |
O |
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GLU | E:177 | E:177 | 114.0 | 0.6 | -95.1 | 128.6 | 114.0 | 0.6 | 0.0 |
HOH |
6.969 |
N |
O |
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GLU | F:177 | F:177 | 98.0 | 0.516 | -91.5 | 106.4 | 98.0 | 0.516 | 0.0 |
HOH |
2.865 |
OE2 |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q8tdq7-f1 | 1 | Q8TDQ7 | 100.0 | 0.0 | ASP | A:177 | A:177 | 61.0 | 0.407 | -97.3 | 111.9 | ||
af-p46926-f1 | 1 | P46926 | 87.96 | 0.0 | GLU | A:177 | A:177 | 87.0 | 0.458 | -93.1 | 111.4 |