Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 44719202 . C A CCDS3469.1:NM_138335.2:c.337Gat>Tat_NP_612208.1:p.113D>Y Homo sapiens glucosamine-6-phosphate deaminase 2 (GNPDA2), transcript variant 1, mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ne7 1 P46926 87.96 0.0 X-RAY
 2003-09-23 ASP A:113 A:113 100.0 0.667 S -105.8 87.2 100.0 0.667 0.0 HOH
 2.727
 O
 O
ASP B:113 B:113 97.0 0.647 S -116.8 90.7 97.0 0.647 0.0 HOH
 2.906
 O
 O
ASP C:113 C:113 103.0 0.687 S -95.2 96.0 103.0 0.687 0.0 GLC
HOH
 8.982
2.740
 OD2
O
 O4
O
ASP D:113 D:113 101.0 0.673 S -99.3 96.0 101.0 0.673 0.0 GLC
HOH
 9.883
2.868
 OD2
OD2
 O3
O
ASP E:113 E:113 95.0 0.633 S -115.4 90.8 95.0 0.633 0.0 HOH
 3.679
 OD1
 O
ASP F:113 F:113 96.0 0.64 S -111.6 99.1 96.0 0.64 0.0 GLC
HOH
 9.731
2.835
 OD2
O
 O4
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8tdq7-f1 1 Q8TDQ7 100.0 0.0 ASP A:113 A:113 98.0 0.653 S -113.8 100.7
af-p46926-f1 1 P46926 87.96 0.0 ASP A:113 A:113 96.0 0.64 S -117.3 102.0