Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr4 | 44720352 | . | T | A | CCDS3469.1:NM_138335.2:c.200aAg>aTg_NP_612208.1:p.67K>M | Homo sapiens glucosamine-6-phosphate deaminase 2 (GNPDA2), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1ne7 | 1 | P46926 | 87.96 | 0.0 |
X-RAY |
2003-09-23 | LYS | A:67 | A:67 | 44.0 | 0.22 | E | -115.8 | 136.6 | 44.0 | 0.22 | 0.0 |
HOH |
2.720 |
NZ |
O |
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LYS | B:67 | B:67 | 47.0 | 0.235 | E | -114.9 | 138.1 | 47.0 | 0.235 | 0.0 |
HOH |
2.752 |
NZ |
O |
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LYS | C:67 | C:67 | 47.0 | 0.235 | E | -118.0 | 137.6 | 47.0 | 0.235 | 0.0 |
HOH |
2.750 |
NZ |
O |
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LYS | D:67 | D:67 | 47.0 | 0.235 | E | -113.8 | 136.5 | 47.0 | 0.235 | 0.0 |
HOH |
2.764 |
NZ |
O |
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LYS | E:67 | E:67 | 45.0 | 0.225 | E | -116.5 | 136.3 | 45.0 | 0.225 | 0.0 |
HOH |
2.733 |
NZ |
O |
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LYS | F:67 | F:67 | 47.0 | 0.235 | E | -115.0 | 141.8 | 47.0 | 0.235 | 0.0 |
HOH |
2.901 |
NZ |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q8tdq7-f1 | 1 | Q8TDQ7 | 100.0 | 0.0 | LYS | A:67 | A:67 | 47.0 | 0.235 | E | -108.9 | 130.3 | |
af-p46926-f1 | 1 | P46926 | 87.96 | 0.0 | LYS | A:67 | A:67 | 55.0 | 0.275 | E | -106.6 | 130.9 |