Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 44720353 . T A CCDS3469.1:NM_138335.2:c.199Aag>Tag_NP_612208.1:p.67K>* Homo sapiens glucosamine-6-phosphate deaminase 2 (GNPDA2), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ne7 1 P46926 87.96 0.0 X-RAY
2003-09-23 LYS A:67 A:67 44.0 0.22 E -115.8 136.6 44.0 0.22 0.0 HOH
2.720
NZ
O
LYS B:67 B:67 47.0 0.235 E -114.9 138.1 47.0 0.235 0.0 HOH
2.752
NZ
O
LYS C:67 C:67 47.0 0.235 E -118.0 137.6 47.0 0.235 0.0 HOH
2.750
NZ
O
LYS D:67 D:67 47.0 0.235 E -113.8 136.5 47.0 0.235 0.0 HOH
2.764
NZ
O
LYS E:67 E:67 45.0 0.225 E -116.5 136.3 45.0 0.225 0.0 HOH
2.733
NZ
O
LYS F:67 F:67 47.0 0.235 E -115.0 141.8 47.0 0.235 0.0 HOH
2.901
NZ
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8tdq7-f1 1 Q8TDQ7 100.0 0.0 LYS A:67 A:67 47.0 0.235 E -108.9 130.3
af-p46926-f1 1 P46926 87.96 0.0 LYS A:67 A:67 55.0 0.275 E -106.6 130.9