Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 44720408 . G A CCDS3469.1:NM_138335.2:c.144tgC>tgT_NP_612208.1:p.48C>C Homo sapiens glucosamine-6-phosphate deaminase 2 (GNPDA2), transcript variant 1, mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ne7 1 P46926 87.96 0.0 X-RAY
 2003-09-23 CYS A:48 A:48 6.0 0.044 H -67.7 -45.4 6.0 0.044 0.0 HOH
 2.799
 N
 O
CYS B:48 B:48 5.0 0.037 H -65.1 -45.1 5.0 0.037 0.0 HOH
 2.791
 N
 O
CYS C:48 C:48 5.0 0.037 H -65.6 -45.4 5.0 0.037 0.0 HOH
 2.762
 N
 O
CYS D:48 D:48 5.0 0.037 H -66.3 -47.4 5.0 0.037 0.0 HOH
 2.809
 N
 O
CYS E:48 E:48 5.0 0.037 H -63.1 -48.7 5.0 0.037 0.0 HOH
 2.853
 N
 O
CYS F:48 F:48 3.0 0.022 H -65.2 -46.9 3.0 0.022 0.0 HOH
 2.813
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8tdq7-f1 1 Q8TDQ7 100.0 0.0 CYS A:48 A:48 4.0 0.03 H -61.1 -46.1
af-p46926-f1 1 P46926 87.96 0.0 CYS A:48 A:48 3.0 0.022 H -63.7 -46.4