Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 44724158 . G A CCDS3469.1:NM_138335.2:c.67Cgc>Tgc_NP_612208.1:p.23R>C Homo sapiens glucosamine-6-phosphate deaminase 2 (GNPDA2), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1ne7 1 P46926 87.96 0.0 X-RAY
 2003-09-23 ARG A:23 A:23 26.0 0.116 H -62.7 -40.6 26.0 0.116 0.0 GLC
GLC
HOH
 3.973
4.419
2.753
 CD
NH1
O
 O6
O2
O
ARG B:23 B:23 26.0 0.116 H -63.0 -44.0 26.0 0.116 0.0 GLC
GLC
HOH
 4.145
4.348
2.728
 CD
NH1
O
 O6
O2
O
ARG C:23 C:23 26.0 0.116 H -62.8 -43.7 26.0 0.116 0.0 GLC
GLC
HOH
 3.954
4.269
2.732
 CD
NH1
O
 O6
O2
O
ARG D:23 D:23 27.0 0.12 H -65.7 -41.1 27.0 0.12 0.0 GLC
GLC
HOH
 4.025
4.476
2.773
 CD
NH1
O
 O6
O2
O
ARG E:23 E:23 27.0 0.12 H -61.9 -44.3 27.0 0.12 0.0 GLC
GLC
HOH
 4.122
4.238
2.727
 CD
NH1
O
 O6
O2
O
ARG F:23 F:23 26.0 0.116 H -60.7 -42.4 26.0 0.116 0.0 GLC
GLC
HOH
 4.070
4.268
2.717
 CD
NH1
O
 O6
O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8tdq7-f1 1 Q8TDQ7 100.0 0.0 ARG A:23 A:23 45.0 0.2 H -63.5 -42.8
af-p46926-f1 1 P46926 87.96 0.0 ARG A:23 A:23 51.0 0.227 H -64.5 -42.9