Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 131409627 . G A CCDS4150.1:NM_000758.3:c.111caG>caA_NP_000749.2:p.37Q>Q Homo sapiens colony stimulating factor 2 (CSF2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5d71 1 P04141 100.0 1e-105 X-RAY
 2015-10-14 GLN A:37 A:20 69.0 0.383 H -68.1 -42.3 21.0 0.117 0.266 C:None:0.267
 HOH
 3.083
 O
 O
5d72 1 P04141 100.0 2e-103 X-RAY
 2015-10-14 GLN A:37 A:20 107.0 0.594 H -62.4 -37.6 22.0 0.122 0.472 D:None:0.472
 HOH
 5.375
 NE2
 O
GLN B:37 B:20 112.0 0.622 H -62.3 -41.9 NA NA NA
1csg 1 P04141 100.0 6e-93 X-RAY
 1993-10-31 GLN A:20 A:20 132.0 0.733 H -64.9 -36.7 85.0 0.472 0.261 B:P04141:0.261
GLN B:20 B:20 127.0 0.706 H -67.6 -34.1 78.0 0.433 0.273 A:P04141:0.272
2gmf 1 P04141 100.0 6e-93 X-RAY
 1996-11-08 GLN A:20 A:20 127.0 0.706 H -65.8 -44.2 127.0 0.706 0.0 HOH
 3.650
 CB
 O
GLN B:20 B:20 125.0 0.694 H -60.7 -44.7 NA NA NA
4nkq 2 P04141 100.0 6e-93 X-RAY
 2015-09-23 GLN B:20 C:20 97.0 0.539 H -59.8 -43.7 14.0 0.078 0.461 A:P32927:0.211
C:P15509:0.256
5c7x 1 P04141 100.0 6e-93 X-RAY
 2015-10-14 GLN A:20 A:20 115.0 0.639 H -65.9 -37.4 32.0 0.178 0.461 D:None:0.461
 HOH
 5.256
 NE2
 O
GLN B:20 B:20 109.0 0.606 H -71.2 -40.7 NA NA NA
5d70 1 P04141 100.0 6e-93 X-RAY
 2015-10-14 GLN A:20 A:20 68.0 0.378 H -66.8 -42.6 21.0 0.117 0.261 C:None:0.261
 HOH
 2.885
 O
 O
6bfq 3 P04141 100.0 6e-93 X-RAY
 2018-09-12 GLN I:20 NA:NA DO NA DO DO DO NA NA NA
GLN J:20 J:20 124.0 0.689 H -70.9 -49.7 NA NA NA
GLN K:20 NA:NA DO NA DO DO DO NA NA NA
GLN L:20 K:20 127.0 0.706 H -73.5 -50.3 127.0 0.706 0.0 HOH
 8.334
 C
 O
6bfs 3 P04141 100.0 6e-93 X-RAY
 2018-09-12 GLN C:20 C:20 71.0 0.394 H -66.3 -41.1 55.0 0.306 0.088 B:None:0.089
 HOH
 4.726
 NE2
 O
4rs1 2 P04141 100.0 3e-81 X-RAY
 2015-11-11 GLN B:7 A:20 65.0 0.361 H -64.0 -52.4 29.0 0.161 0.2 A:P15509:0.2
5d22 1 P28773 80.31 6e-74 X-RAY
 2016-11-16 LYS A:20 A:20 124.0 0.62 H -58.5 -51.6 124.0 0.62 0.0 EDO
HOH
 2.895
3.698
 NZ
O
 O2
O
LYS B:20 B:20 130.0 0.65 H -57.5 -51.1 NA NA NA
5d28 2 P28773 80.31 6e-74 X-RAY
 2016-11-16 LYS B:20 B:20 131.0 0.655 H -64.2 -39.1 24.0 0.12 0.535 A:Q9J5U5:0.535
 HOH
 8.055
 CD
 O
LYS C:20 C:20 119.0 0.595 H -64.7 -39.2 21.0 0.105 0.49 D:Q9J5U5:0.49
 HOH
 9.851
 C
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04141-f1 1 P04141 100.0 5e-106 GLN A:37 A:37 100.0 0.556 H -62.4 -44.1