Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 131411466 . C A CCDS4150.1:NM_000758.3:c.356aCc>aAc_NP_000749.2:p.119T>N Homo sapiens colony stimulating factor 2 (CSF2), mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5d71 1 P04141 100.0 1e-105 X-RAY
 2015-10-14 THR A:119 A:102 70.0 0.5 E -70.7 158.6 70.0 0.5 0.0 HOH
 3.707
 CB
 O
5d72 1 P04141 100.0 2e-103 X-RAY
 2015-10-14 THR A:119 A:102 51.0 0.364 E -69.3 155.5 51.0 0.364 0.0
THR B:119 B:102 60.0 0.429 E -72.0 165.9 NA NA NA
1csg 1 P04141 100.0 6e-93 X-RAY
 1993-10-31 THR A:102 A:102 46.0 0.329 E -74.4 157.0 46.0 0.329 0.0
THR B:102 B:102 37.0 0.264 E -74.3 160.7 37.0 0.264 0.0
2gmf 1 P04141 100.0 6e-93 X-RAY
 1996-11-08 THR A:102 A:102 55.0 0.393 E -72.1 153.1 55.0 0.393 0.0 HOH
 6.183
 N
 O
THR B:102 B:102 42.0 0.3 E -77.3 154.6 NA NA NA
4nkq 2 P04141 100.0 6e-93 X-RAY
 2015-09-23 THR B:102 C:102 47.0 0.336 E -79.3 158.1 38.0 0.271 0.065 C:P15509:0.064
5c7x 1 P04141 100.0 6e-93 X-RAY
 2015-10-14 THR A:102 A:102 65.0 0.464 E -65.8 151.6 65.0 0.464 0.0 HOH
 6.673
 OG1
 O
THR B:102 B:102 43.0 0.307 E -70.8 165.8 NA NA NA
5d70 1 P04141 100.0 6e-93 X-RAY
 2015-10-14 THR A:102 A:102 61.0 0.436 E -73.9 155.1 61.0 0.436 0.0 HOH
 2.579
 OG1
 O
6bfq 3 P04141 100.0 6e-93 X-RAY
 2018-09-12 THR I:102 G:102 75.0 0.536 -65.8 161.6 NA NA NA
THR J:102 J:102 75.0 0.536 -67.0 163.1 NA NA NA
THR K:102 I:102 74.0 0.529 -65.2 161.9 NA NA NA
THR L:102 K:102 71.0 0.507 -65.3 162.6 18.0 0.129 0.378 B:None:0.193
A:None:0.293
 HOH
 3.276
 CB
 O
6bfs 3 P04141 100.0 6e-93 X-RAY
 2018-09-12 THR C:102 C:102 64.0 0.457 E -70.2 160.5 64.0 0.457 0.0 HOH
 2.956
 N
 O
4rs1 2 P04141 100.0 3e-81 X-RAY
 2015-11-11 THR B:89 A:102 43.0 0.307 -64.7 171.0 5.0 0.036 0.271 A:P15509:0.271
5d22 1 P28773 80.31 6e-74 X-RAY
 2016-11-16 THR A:102 A:102 49.0 0.35 E -67.9 156.5 49.0 0.35 0.0 HOH
 2.824
 N
 O
THR B:102 B:102 51.0 0.364 E -70.3 157.7 NA NA NA
5d28 2 P28773 80.31 6e-74 X-RAY
 2016-11-16 THR B:102 B:102 49.0 0.35 E -67.9 157.2 49.0 0.35 0.0
THR C:102 C:102 65.0 0.464 E -69.3 152.3 65.0 0.464 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p04141-f1 1 P04141 100.0 5e-106 THR A:119 A:119 53.0 0.379 E -68.7 156.7