Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 158747351 . A C CCDS4346.1:NM_002187.2:c.660taT>taG_NP_002178.2:p.220Y>* Homo sapiens interleukin 12B (IL12B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4grw 2 P29460 100.0 0.0 X-RAY
 2014-02-19 TYR B:220 B:198 3.0 0.013 E -106.4 134.0 3.0 0.013 0.0 NAG
NAG
HOH
 3.505
7.347
3.038
 OH
OH
O
 O7
O5
O
TYR D:220 D:198 3.0 0.013 E -106.0 134.1 NA NA NA
5mxa 2 P29460 100.0 0.0 X-RAY
 2017-12-20 TYR B:220 A:220 4.0 0.017 E -114.6 128.7 4.0 0.017 0.0 NAG
NAG
HOH
 3.074
6.653
2.923
 OH
HE2
O
 H2
C1
O
5mzv 1 P29460 100.0 0.0 X-RAY
 2018-01-03 TYR A:220 A:220 3.0 0.013 E -92.6 146.5 3.0 0.013 0.0 NAG
NAG
HOH
 3.141
6.809
2.324
 HE2
HE2
O
 O5
C1
O
5njd 1 P29460 100.0 0.0 X-RAY
 2018-01-03 TYR A:220 A:220 2.0 0.009 E -114.1 135.1 2.0 0.009 0.0 NAG
NAG
 3.196
7.332
 OH
CE2
 O7
C1
TYR C:220 C:220 2.0 0.009 E -107.5 133.2 NA NA NA
TYR E:220 E:220 1.0 0.004 E -111.9 132.5 NA NA NA
TYR G:220 G:220 2.0 0.009 E -113.0 136.3 NA NA NA
TYR I:220 I:220 2.0 0.009 E -110.3 136.5 NA NA NA
TYR K:220 K:220 1.0 0.004 E -115.7 133.0 NA NA NA
6wdq 1 P29460 100.0 0.0 X-RAY
 2021-02-24 TYR A:200 A:220 19.0 0.083 E -110.8 140.8 19.0 0.083 0.0 NAG
 4.374
 CE2
 O5
3duh 1 P29460 99.35 0.0 X-RAY
 2008-08-19 TYR A:200 A:198 2.0 0.009 E -102.3 135.3 2.0 0.009 0.0 NAG
HOH
 3.499
4.329
 OH
OH
 C1
O
TYR B:200 B:198 0.0 0.0 E -103.9 138.3 NA NA NA
1f42 1 P29460 100.0 0.0 X-RAY
 2001-06-13 TYR A:198 A:198 4.0 0.017 E -101.8 132.0 4.0 0.017 0.0 NAG
NAG
HOH
 2.932
7.257
3.037
 OH
OH
O
 C8
O5
O
1f45 1 P29460 100.0 0.0 X-RAY
 2001-06-20 TYR A:198 A:198 4.0 0.017 E -123.4 117.9 4.0 0.017 0.0 NAG
NAG
HOH
 3.710
7.163
9.059
 OH
OH
CD2
 O7
O5
O
3hmx 1 P29460 100.0 0.0 X-RAY
 2010-06-09 TYR A:198 A:198 2.0 0.009 E -108.6 145.5 2.0 0.009 0.0 NAG
NAG
HOH
 3.609
7.039
2.720
 OH
OH
O
 O7
C1
O
3qwr 1 P29460 100.0 0.0 X-RAY
 2012-02-01 TYR A:198 A:198 1.0 0.004 E -99.1 145.1 1.0 0.004 0.0 NAG
NAG
 3.503
7.086
 OH
OH
 C2
C1
5mj3 1 P29460 100.0 0.0 X-RAY
 2017-01-11 TYR A:198 A:220 4.0 0.017 E -102.7 136.4 4.0 0.017 0.0 NAG
NAG
PG4
HOH
 2.995
6.514
4.618
2.687
 OH
HE2
HD1
O
 H2
C1
H31
O
5mj4 1 P29460 100.0 0.0 X-RAY
 2017-01-11 TYR A:198 A:220 2.0 0.009 E -103.4 136.0 2.0 0.009 0.0 NAG
NAG
 2.930
6.211
 OH
HE2
 H2
H1
6uib 2 P29460 100.0 0.0 X-RAY
 2020-07-15 TYR B:202 B:198 4.0 0.017 E -110.7 135.8 4.0 0.017 0.0 NAG
NAG
HOH
 3.606
7.188
4.004
 OH
OH
OH
 O7
O5
O
3d85 4 P29460 99.67 0.0 X-RAY
 2008-09-02 TYR D:198 D:198 0.0 0.0 E -99.2 143.6 0.0 0.0 0.0 HOH
 2.605
 O
 O
3d87 2 P29460 99.67 0.0 X-RAY
 2008-09-02 TYR B:198 B:198 7.0 0.03 E -124.1 135.4 7.0 0.03 0.0
TYR D:198 D:198 6.0 0.026 -156.2 131.4 6.0 0.026 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p29460-f1 1 P29460 100.0 0.0 TYR A:220 A:220 3.0 0.013 E -104.1 136.3