Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 158750296 . C A CCDS4346.1:NM_002187.2:c.130Gaa>Taa_NP_002178.2:p.44E>* Homo sapiens interleukin 12B (IL12B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4grw 2 P29460 100.0 0.0 X-RAY
 2014-02-19 GLU B:44 B:22 58.0 0.305 E -120.6 139.0 58.0 0.305 0.0 NAG
NAG
BMA
MAN
MAN
HOH
 9.384
9.004
8.829
9.823
8.429
3.250
 OE2
OE2
OE1
OE1
OE1
CB
 O6
C3
O2
C6
O2
O
GLU D:44 D:22 52.0 0.274 E -119.3 131.7 NA NA NA
5mxa 2 P29460 100.0 0.0 X-RAY
 2017-12-20 GLU B:44 A:44 52.0 0.274 E -125.7 137.4 52.0 0.274 0.0 NAG
NAG
BMA
MAN
 9.048
8.242
8.268
9.714
 OE2
OE2
OE1
OE1
 HO6
HO3
HO2
H5
5mzv 1 P29460 100.0 0.0 X-RAY
 2018-01-03 GLU A:44 A:44 53.0 0.279 E -115.6 139.6 53.0 0.279 0.0 NAG
NAG
BMA
MAN
MAN
MAN
HOH
 9.212
8.130
8.140
8.885
9.083
5.257
3.061
 OE1
OE1
OE2
OE2
OE2
HG3
HA
 HO6
H3
O2
O4
H2
HO6
O
5njd 1 P29460 100.0 0.0 X-RAY
 2018-01-03 GLU A:44 A:44 109.0 0.574 E -121.3 145.2 109.0 0.574 0.0 MAN
 9.948
 OE1
 O3
GLU C:44 C:44 106.0 0.558 E -131.5 147.4 NA NA NA
GLU E:44 E:44 104.0 0.547 E -142.2 143.7 NA NA NA
GLU G:44 G:44 102.0 0.537 E -140.0 157.8 NA NA NA
GLU I:44 I:44 106.0 0.558 E -128.4 159.4 NA NA NA
GLU K:44 K:44 102.0 0.537 E -123.9 149.7 NA NA NA
6wdq 1 P29460 100.0 0.0 X-RAY
 2021-02-24 GLU A:24 A:44 85.0 0.447 E -128.6 116.6 85.0 0.447 0.0
3duh 1 P29460 99.35 0.0 X-RAY
 2008-08-19 GLU A:24 A:22 112.0 0.589 E -88.5 137.5 112.0 0.589 0.0 HOH
 9.242
 O
 O
GLU B:24 B:22 89.0 0.468 E -106.1 137.6 NA NA NA
1f42 1 P29460 100.0 0.0 X-RAY
 2001-06-13 GLU A:22 A:22 51.0 0.268 E -136.3 134.5 51.0 0.268 0.0 NAG
NAG
MAN
HOH
 9.767
9.387
8.595
2.860
 OE2
OE2
OE1
OE2
 O6
O3
O2
O
1f45 1 P29460 100.0 0.0 X-RAY
 2001-06-20 GLU A:22 A:22 56.0 0.295 E -118.9 133.2 56.0 0.295 0.0 NAG
MAN
HOH
 8.998
9.144
2.891
 OE2
OE2
OE1
 O4
C1
O
3hmx 1 P29460 100.0 0.0 X-RAY
 2010-06-09 GLU A:22 A:22 59.0 0.311 E -110.0 134.2 58.0 0.305 0.006 C:None:0.005
 NAG
BMA
MAN
HOH
 9.538
8.428
7.494
3.672
 OE2
OE2
OE2
OE2
 O4
O2
O4
O
3qwr 1 P29460 100.0 0.0 X-RAY
 2012-02-01 GLU A:22 A:22 102.0 0.537 -15.2 134.3 102.0 0.537 0.0 NAG
BMA
 9.140
9.172
 OE2
OE1
 C8
O6
5mj3 1 P29460 100.0 0.0 X-RAY
 2017-01-11 GLU A:22 A:44 99.0 0.521 E -131.7 141.9 99.0 0.521 0.0 NAG
NAG
MAN
PGE
HOH
 9.921
9.493
9.549
4.531
2.623
 HG3
HG3
OE1
OE2
HG3
 HO6
H83
HO3
C2
O
5mj4 1 P29460 100.0 0.0 X-RAY
 2017-01-11 GLU A:22 A:44 99.0 0.521 E -131.5 141.7 99.0 0.521 0.0 NAG
NAG
 9.614
8.714
 HG3
HG3
 HO6
H83
6uib 2 P29460 100.0 0.0 X-RAY
 2020-07-15 GLU B:26 B:22 74.0 0.389 E -102.7 126.2 74.0 0.389 0.0
3d85 4 P29460 99.67 0.0 X-RAY
 2008-09-02 GLU D:22 D:22 53.0 0.279 E -136.9 138.2 53.0 0.279 0.0 HOH
 2.647
 OE1
 O
3d87 2 P29460 99.67 0.0 X-RAY
 2008-09-02 GLU B:22 B:22 60.0 0.316 E -148.8 145.1 60.0 0.316 0.0
GLU D:22 D:22 58.0 0.305 B -123.2 153.1 58.0 0.305 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p29460-f1 1 P29460 100.0 0.0 GLU A:44 A:44 77.0 0.405 E -119.7 141.6