Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 224479 . C A CCDS3853.1:NM_004168.2:c.155tCt>tAt_NP_004159.2:p.52S>Y Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
2020-08-26 SER A:20 NA:NA DO NA DO DO DO NA NA NA
SER C:20 NA:NA DO NA DO DO DO NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
2015-08-05 SER A:52 A:10 121.0 1.0 360.0 174.5 121.0 1.0 0.0 HOH
8.682
C
O
4yxd 1 Q0QF01 94.58 0.0 X-RAY
2016-03-02 SER A:52 A:10 126.0 1.0 360.0 -48.1 126.0 1.0 0.0
1zoy 1 Q0QF01 96.3 0.0 X-RAY
2005-07-12 SER A:10 A:10 61.0 0.53 360.0 178.0 61.0 0.53 0.0 HOH
8.562
OG
O
1zp0 1 ? 96.3 0.0 X-RAY
2005-07-12 SER A:10 A:10 61.0 0.53 360.0 175.2 61.0 0.53 0.0
3abv 1 Q0QF01 96.3 0.0 X-RAY
2011-02-09 SER A:10 A:10 108.0 0.939 360.0 69.6 108.0 0.939 0.0
3ae1 1 Q0QF01 96.3 0.0 X-RAY
2011-02-09 SER A:10 A:10 79.0 0.687 360.0 82.3 79.0 0.687 0.0
3ae2 1 Q0QF01 96.3 0.0 X-RAY
2011-02-09 SER A:10 A:10 77.0 0.67 360.0 75.9 77.0 0.67 0.0
3ae3 1 Q0QF01 96.3 0.0 X-RAY
2011-02-09 SER A:10 A:10 61.0 0.53 360.0 -43.1 61.0 0.53 0.0
3ae4 1 Q0QF01 96.3 0.0 X-RAY
2011-02-09 SER A:10 A:10 75.0 0.652 360.0 85.8 75.0 0.652 0.0
3ae5 1 Q0QF01 96.3 0.0 X-RAY
2011-02-09 SER A:10 A:10 131.0 1.0 360.0 128.7 131.0 1.0 0.0
3ae6 1 Q0QF01 96.3 0.0 X-RAY
2011-02-09 SER A:10 A:10 132.0 1.0 360.0 117.5 132.0 1.0 0.0
3ae7 1 Q0QF01 96.3 0.0 X-RAY
2011-02-09 SER A:10 A:10 120.0 1.0 360.0 103.3 120.0 1.0 0.0
3ae8 1 Q0QF01 96.3 0.0 X-RAY
2011-02-09 SER A:10 A:10 125.0 1.0 360.0 129.8 125.0 1.0 0.0
3ae9 1 Q0QF01 96.3 0.0 X-RAY
2011-02-09 SER A:10 A:10 67.0 0.583 360.0 83.9 67.0 0.583 0.0
3aea 1 Q0QF01 96.3 0.0 X-RAY
2011-02-09 SER A:10 A:10 79.0 0.687 360.0 53.0 79.0 0.687 0.0
3aeb 1 Q0QF01 96.3 0.0 X-RAY
2011-02-09 SER A:10 A:10 74.0 0.643 360.0 81.2 74.0 0.643 0.0
3aec 1 Q0QF01 96.3 0.0 X-RAY
2011-02-09 SER A:10 A:10 87.0 0.757 360.0 135.3 87.0 0.757 0.0
3aed 1 Q0QF01 96.3 0.0 X-RAY
2011-02-09 SER A:10 A:10 64.0 0.557 360.0 123.2 64.0 0.557 0.0
3aee 1 Q0QF01 96.3 0.0 X-RAY
2011-02-09 SER A:10 A:10 130.0 1.0 360.0 -58.2 130.0 1.0 0.0
3aef 1 Q0QF01 96.3 0.0 X-RAY
2011-02-09 SER A:10 A:10 143.0 1.0 360.0 165.7 143.0 1.0 0.0
3aeg 1 Q0QF01 96.3 0.0 X-RAY
2011-02-09 SER A:10 A:10 112.0 0.974 360.0 111.5 112.0 0.974 0.0
3sfd 1 Q0QF01 96.3 0.0 X-RAY
2011-09-07 SER A:10 A:10 46.0 0.4 360.0 163.0 46.0 0.4 0.0
3sfe 1 Q0QF01 96.3 0.0 X-RAY
2011-09-07 SER A:10 A:10 122.0 1.0 360.0 -101.7 122.0 1.0 0.0
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
2005-12-20 SER A:9 A:9 97.0 0.843 94.6 123.2 97.0 0.843 0.0 HOH
3.035
O
O
1yq4 1 50736125 91.79 0.0 X-RAY
2005-12-20 SER A:9 A:9 96.0 0.835 81.4 130.5 96.0 0.835 0.0 HOH
2.881
O
O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
2005-12-20 SER A:9 NA:NA DO NA DO DO DO NA NA NA
SER E:9 NA:NA DO NA DO DO DO NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
2006-06-20 SER A:9 NA:NA DO NA DO DO DO NA NA NA
SER E:9 NA:NA DO NA DO DO DO NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
2006-06-20 SER A:9 A:9 NA NA NA NA NA NA NA NA HOH
8.011
CA
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
2010-08-25 SER A:9 A:9 78.0 0.678 360.0 -146.4 78.0 0.678 0.0 HOH
2.857
CB
O
SER E:9 NA:NA DO NA DO DO DO NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
2019-11-06 SER A:9 NA:NA DO NA DO DO DO NA NA NA
6myp 1 F1NPJ4 91.79 0.0 X-RAY
2019-11-06 SER A:9 NA:NA DO NA DO DO DO NA NA NA
6myq 1 F1NPJ4 91.79 0.0 X-RAY
2019-11-06 SER A:9 NA:NA DO NA DO DO DO NA NA NA
6myr 1 F1NPJ4 91.79 0.0 X-RAY
2019-10-16 SER A:9 NA:NA DO NA DO DO DO NA NA NA
6mys 1 F1NPJ4 91.79 0.0 X-RAY
2019-11-06 SER A:9 NA:NA DO NA DO DO DO NA NA NA
6myt 1 F1NPJ4 91.79 0.0 X-RAY
2019-11-06 SER A:9 NA:NA DO NA DO DO DO NA NA NA
6myu 1 F1NPJ4 91.79 0.0 X-RAY
2019-11-06 SER A:9 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 SER A:52 A:52 29.0 0.252 -155.7 135.9