Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 224484 . C A CCDS3853.1:NM_004168.2:c.160Cag>Aag_NP_004159.2:p.54Q>K Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 GLN A:22 A:54 179.0 0.994 360.0 -19.5 179.0 0.994 0.0
GLN C:22 C:54 197.0 1.0 360.0 -62.4 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 GLN A:54 A:12 103.0 0.572 S -74.2 -21.1 103.0 0.572 0.0 HOH
 7.672
 C
 O
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 GLN A:54 A:12 116.0 0.644 S -71.2 -46.4 116.0 0.644 0.0
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 GLN A:12 A:12 123.0 0.683 S -107.7 -14.4 123.0 0.683 0.0 HOH
 8.909
 O
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 GLN A:12 A:12 124.0 0.689 S -103.4 -17.2 124.0 0.689 0.0
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:12 A:12 116.0 0.644 S -99.9 -34.8 116.0 0.644 0.0
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:12 A:12 127.0 0.706 S -122.1 -25.4 127.0 0.706 0.0
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:12 A:12 134.0 0.744 S -99.0 -4.8 134.0 0.744 0.0
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:12 A:12 135.0 0.75 T -103.9 7.2 135.0 0.75 0.0
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:12 A:12 107.0 0.594 S -94.1 -28.5 107.0 0.594 0.0
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:12 A:12 110.0 0.611 S -73.0 -47.1 110.0 0.611 0.0
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:12 A:12 114.0 0.633 S -65.5 -32.3 114.0 0.633 0.0
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:12 A:12 106.0 0.589 S -90.2 -41.5 106.0 0.589 0.0
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:12 A:12 110.0 0.611 S -86.6 -40.8 110.0 0.611 0.0
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:12 A:12 118.0 0.656 S -86.3 -46.0 118.0 0.656 0.0
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:12 A:12 113.0 0.628 S -116.0 -35.0 113.0 0.628 0.0
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:12 A:12 112.0 0.622 S -124.5 -11.7 112.0 0.622 0.0
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:12 A:12 131.0 0.728 S -85.7 -36.8 131.0 0.728 0.0
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:12 A:12 162.0 0.9 S -79.5 -20.6 162.0 0.9 0.0
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:12 A:12 101.0 0.561 S -77.3 -44.4 101.0 0.561 0.0
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:12 A:12 105.0 0.583 T -78.5 -34.3 105.0 0.583 0.0
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:12 A:12 133.0 0.739 S -79.7 -57.4 133.0 0.739 0.0
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLN A:12 A:12 119.0 0.661 S -83.0 -13.7 119.0 0.661 0.0
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLN A:12 A:12 119.0 0.661 -59.1 -29.3 119.0 0.661 0.0
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 GLN A:11 A:11 135.0 0.75 S -81.2 -11.9 135.0 0.75 0.0 HOH
 3.431
 NE2
 O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 GLN A:11 A:11 129.0 0.717 S -70.1 -19.3 129.0 0.717 0.0 HOH
 3.678
 OE1
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 GLN A:11 A:11 174.0 0.967 -78.6 -18.3 174.0 0.967 0.0 UNL
UNL
HOH
 3.538
2.393
2.975
 CB
OE1
N
 O
O
O
GLN E:11 N:11 172.0 0.956 -64.0 -27.4 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLN A:11 A:11 158.0 0.878 -75.3 -25.3 158.0 0.878 0.0 HOH
 2.751
 OE1
 O
GLN E:11 N:11 163.0 0.906 -71.0 -28.3 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLN A:11 A:11 170.0 0.944 -94.6 -3.3 170.0 0.944 0.0 HOH
 2.791
 NE2
 O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 GLN A:11 A:11 135.0 0.75 S -83.5 -18.6 135.0 0.75 0.0 UNL
HOH
 8.378
2.979
 O
CB
 C2
O
GLN E:11 N:11 142.0 0.789 -69.8 -17.9 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:11 A:11 137.0 0.761 -77.9 24.1 137.0 0.761 0.0 UNL
 4.998
 N
 O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:11 A:11 151.0 0.839 66.2 -37.9 151.0 0.839 0.0 HOH
 3.395
 OE1
 O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:11 A:11 174.0 0.967 360.0 -22.1 174.0 0.967 0.0 UNL
HOH
 3.214
3.042
 OE1
O
 O
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 GLN A:11 A:11 188.0 1.0 360.0 -23.3 188.0 1.0 0.0 UNL
 5.652
 NE2
 O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:11 A:11 127.0 0.706 -94.7 -31.2 127.0 0.706 0.0 UNL
 5.031
 N
 O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:11 A:11 189.0 1.0 360.0 -18.6 189.0 1.0 0.0
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:11 A:11 174.0 0.967 360.0 -25.1 174.0 0.967 0.0 UNL
HOH
 3.149
2.877
 OE1
O
 O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 GLN A:54 A:54 140.0 0.778 T -91.1 -22.9