Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 224487 | . | T | A | CCDS3853.1:NM_004168.2:c.163Tat>Aat_NP_004159.2:p.55Y>N | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | TYR | A:23 | A:55 | 42.0 | 0.183 | -121.5 | 108.7 | 42.0 | 0.183 | 0.0 |
HOH |
9.881 |
OH |
O |
|||
| TYR | C:23 | C:55 | 29.0 | 0.126 | -67.7 | 142.9 | NA | NA | NA | ||||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | TYR | A:55 | A:13 | 17.0 | 0.074 | S | -111.5 | 125.2 | 17.0 | 0.074 | 0.0 |
HOH |
3.900 |
O |
O |
||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | TYR | A:55 | A:13 | 6.0 | 0.026 | S | -97.1 | 119.5 | 6.0 | 0.026 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | TYR | A:13 | A:13 | 6.0 | 0.026 | S | -116.4 | 97.9 | 6.0 | 0.026 | 0.0 |
HOH |
6.097 |
C |
O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | TYR | A:13 | A:13 | 5.0 | 0.022 | S | -114.2 | 101.0 | 5.0 | 0.022 | 0.0 | ||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:13 | A:13 | 17.0 | 0.074 | S | -112.6 | 121.7 | 17.0 | 0.074 | 0.0 | ||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:13 | A:13 | 10.0 | 0.043 | S | -106.1 | 124.5 | 10.0 | 0.043 | 0.0 | ||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:13 | A:13 | 12.0 | 0.052 | S | -126.0 | 123.6 | 12.0 | 0.052 | 0.0 | ||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:13 | A:13 | 17.0 | 0.074 | S | -112.7 | 122.6 | 17.0 | 0.074 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:13 | A:13 | 16.0 | 0.07 | S | -101.6 | 133.0 | 16.0 | 0.07 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:13 | A:13 | 15.0 | 0.065 | S | -96.8 | 137.3 | 15.0 | 0.065 | 0.0 | ||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:13 | A:13 | 9.0 | 0.039 | S | -102.3 | 122.9 | 9.0 | 0.039 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:13 | A:13 | 16.0 | 0.07 | S | -101.5 | 129.3 | 16.0 | 0.07 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:13 | A:13 | 23.0 | 0.1 | S | -111.8 | 139.8 | 23.0 | 0.1 | 0.0 | ||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:13 | A:13 | 22.0 | 0.096 | S | -96.6 | 136.3 | 22.0 | 0.096 | 0.0 | ||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:13 | A:13 | 12.0 | 0.052 | S | -108.8 | 120.0 | 12.0 | 0.052 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:13 | A:13 | 11.0 | 0.048 | S | -117.8 | 124.7 | 11.0 | 0.048 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:13 | A:13 | 8.0 | 0.035 | S | -113.9 | 138.0 | 8.0 | 0.035 | 0.0 | ||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:13 | A:13 | 18.0 | 0.078 | S | -108.3 | 143.1 | 18.0 | 0.078 | 0.0 | ||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:13 | A:13 | 12.0 | 0.052 | S | -110.7 | 132.8 | 12.0 | 0.052 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:13 | A:13 | 7.0 | 0.03 | S | -95.1 | 115.4 | 7.0 | 0.03 | 0.0 | ||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:13 | A:13 | 11.0 | 0.048 | S | -94.7 | 137.4 | 11.0 | 0.048 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | TYR | A:13 | A:13 | 9.0 | 0.039 | S | -85.3 | 136.6 | 9.0 | 0.039 | 0.0 |
HOH |
9.070 |
CE2 |
O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | TYR | A:13 | A:13 | 8.0 | 0.035 | S | -92.5 | 129.1 | 8.0 | 0.035 | 0.0 | ||||||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | TYR | A:12 | A:12 | 5.0 | 0.022 | S | -114.6 | 122.4 | 5.0 | 0.022 | 0.0 |
HOH |
3.234 |
O |
O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | TYR | A:12 | A:12 | 8.0 | 0.035 | S | -112.0 | 126.5 | 8.0 | 0.035 | 0.0 |
HOH |
3.769 |
O |
O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | TYR | A:12 | A:12 | 17.0 | 0.074 | S | -115.3 | 134.0 | 17.0 | 0.074 | 0.0 |
UNL UNL UNL HOH |
3.868 6.401 9.048 3.494 |
CD2 N O N |
O O O O |
||
| TYR | E:12 | N:12 | 13.0 | 0.057 | S | -96.2 | 133.5 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | TYR | A:12 | A:12 | 25.0 | 0.109 | S | -121.8 | 111.0 | 25.0 | 0.109 | 0.0 |
HOH |
3.613 |
N |
O |
||
| TYR | E:12 | N:12 | 28.0 | 0.122 | S | -119.3 | 111.4 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | TYR | A:12 | A:12 | 10.0 | 0.043 | S | -123.5 | 141.7 | 10.0 | 0.043 | 0.0 |
HOH |
3.416 |
O |
O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | TYR | A:12 | A:12 | 12.0 | 0.052 | S | -107.5 | 128.7 | 12.0 | 0.052 | 0.0 |
UNL HOH |
8.366 2.723 |
CE2 O |
C2 O |
||
| TYR | E:12 | N:12 | 17.0 | 0.074 | S | -106.8 | 128.3 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | TYR | A:12 | A:12 | 13.0 | 0.057 | S | -117.0 | 123.0 | 13.0 | 0.057 | 0.0 |
UNL HOH |
4.652 8.709 |
CE1 CE2 |
O O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | TYR | A:12 | A:12 | 10.0 | 0.043 | S | -110.4 | 121.9 | 10.0 | 0.043 | 0.0 |
HOH |
3.694 |
CE2 |
O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | TYR | A:12 | A:12 | 27.0 | 0.117 | -119.3 | 114.9 | 27.0 | 0.117 | 0.0 |
UNL HOH |
5.244 3.489 |
CE1 CD2 |
O O |
|||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | TYR | A:12 | A:12 | 29.0 | 0.126 | -114.1 | 132.9 | 29.0 | 0.126 | 0.0 |
UNL |
5.855 |
CE2 |
O |
|||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | TYR | A:12 | A:12 | 18.0 | 0.078 | S | -97.8 | 130.4 | 18.0 | 0.078 | 0.0 |
UNL |
7.658 |
N |
O |
||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | TYR | A:12 | A:12 | 25.0 | 0.109 | -112.3 | 132.0 | 25.0 | 0.109 | 0.0 |
HOH |
9.576 |
OH |
O |
|||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | TYR | A:12 | A:12 | 32.0 | 0.139 | -118.8 | 123.5 | 32.0 | 0.139 | 0.0 |
UNL HOH |
5.223 3.472 |
CE1 CD2 |
O O |
|||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | TYR | A:55 | A:55 | 7.0 | 0.03 | S | -127.9 | 98.9 | |