Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 224505 | . | G | A | CCDS3853.1:NM_004168.2:c.181Gaa>Aaa_NP_004159.2:p.61E>K | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | GLU | A:29 | A:61 | 114.0 | 0.6 | E | -123.1 | 125.7 | 114.0 | 0.6 | 0.0 |
HOH |
5.344 |
N |
O |
||
| GLU | C:29 | C:61 | 118.0 | 0.621 | E | -117.9 | 118.9 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | GLU | A:61 | A:19 | 113.0 | 0.595 | E | -119.7 | 140.8 | 113.0 | 0.595 | 0.0 |
HOH |
3.495 |
CG |
O |
||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | GLU | A:61 | A:19 | 117.0 | 0.616 | E | -147.2 | 116.6 | 117.0 | 0.616 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | GLU | A:19 | A:19 | 108.0 | 0.568 | E | -135.6 | 121.2 | 108.0 | 0.568 | 0.0 |
HOH |
3.613 |
O |
O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | GLU | A:19 | A:19 | 111.0 | 0.584 | E | -138.0 | 119.5 | 111.0 | 0.584 | 0.0 | ||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLU | A:19 | A:19 | 116.0 | 0.611 | E | -116.9 | 128.7 | 116.0 | 0.611 | 0.0 | ||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLU | A:19 | A:19 | 120.0 | 0.632 | E | -118.8 | 121.6 | 120.0 | 0.632 | 0.0 | ||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLU | A:19 | A:19 | 122.0 | 0.642 | E | -125.4 | 115.9 | 122.0 | 0.642 | 0.0 | ||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLU | A:19 | A:19 | 119.0 | 0.626 | E | -118.8 | 118.5 | 119.0 | 0.626 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLU | A:19 | A:19 | 111.0 | 0.584 | E | -132.2 | 121.1 | 111.0 | 0.584 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLU | A:19 | A:19 | 122.0 | 0.642 | E | -125.1 | 124.6 | 122.0 | 0.642 | 0.0 | ||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLU | A:19 | A:19 | 115.0 | 0.605 | E | -128.0 | 122.3 | 115.0 | 0.605 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLU | A:19 | A:19 | 120.0 | 0.632 | E | -112.9 | 118.2 | 120.0 | 0.632 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLU | A:19 | A:19 | 122.0 | 0.642 | E | -113.8 | 121.6 | 122.0 | 0.642 | 0.0 | ||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLU | A:19 | A:19 | 111.0 | 0.584 | E | -125.7 | 125.4 | 111.0 | 0.584 | 0.0 | ||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLU | A:19 | A:19 | 121.0 | 0.637 | E | -119.7 | 112.4 | 121.0 | 0.637 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLU | A:19 | A:19 | 107.0 | 0.563 | E | -138.2 | 123.8 | 107.0 | 0.563 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLU | A:19 | A:19 | 144.0 | 0.758 | E | -111.8 | 121.5 | 144.0 | 0.758 | 0.0 | ||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLU | A:19 | A:19 | 114.0 | 0.6 | E | -124.5 | 122.7 | 114.0 | 0.6 | 0.0 | ||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLU | A:19 | A:19 | 115.0 | 0.605 | E | -123.3 | 118.9 | 115.0 | 0.605 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLU | A:19 | A:19 | 106.0 | 0.558 | E | -135.4 | 117.1 | 106.0 | 0.558 | 0.0 | ||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLU | A:19 | A:19 | 108.0 | 0.568 | E | -129.6 | 123.0 | 108.0 | 0.568 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | GLU | A:19 | A:19 | 113.0 | 0.595 | E | -119.6 | 117.9 | 113.0 | 0.595 | 0.0 |
HOH |
3.536 |
OE1 |
O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | GLU | A:19 | A:19 | 115.0 | 0.605 | E | -128.5 | 127.1 | 115.0 | 0.605 | 0.0 |
HOH |
3.149 |
O |
O |
||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLU | A:18 | A:18 | 122.0 | 0.642 | E | -132.1 | 129.0 | 122.0 | 0.642 | 0.0 |
HOH |
3.121 |
CG |
O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLU | A:18 | A:18 | 107.0 | 0.563 | E | -131.2 | 121.3 | 107.0 | 0.563 | 0.0 |
HOH |
3.831 |
O |
O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLU | A:18 | A:18 | 121.0 | 0.637 | E | -120.3 | 117.2 | 121.0 | 0.637 | 0.0 |
UNL UNL HOH |
8.043 9.693 2.672 |
N OE2 O |
O O O |
||
| GLU | E:18 | N:18 | 118.0 | 0.621 | E | -121.2 | 115.6 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | GLU | A:18 | A:18 | 121.0 | 0.637 | E | -120.4 | 126.9 | 121.0 | 0.637 | 0.0 |
HOH |
2.594 |
N |
O |
||
| GLU | E:18 | N:18 | 124.0 | 0.653 | E | -120.5 | 128.3 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | GLU | A:18 | A:18 | 117.0 | 0.616 | E | -117.6 | 113.4 | 117.0 | 0.616 | 0.0 |
HOH |
2.754 |
OE1 |
O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | GLU | A:18 | A:18 | 117.0 | 0.616 | E | -125.1 | 124.6 | 117.0 | 0.616 | 0.0 |
UNL HOH |
6.657 2.774 |
N O |
C2 O |
||
| GLU | E:18 | N:18 | 118.0 | 0.621 | E | -126.1 | 124.5 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLU | A:18 | A:18 | 103.0 | 0.542 | E | -137.2 | 122.0 | 103.0 | 0.542 | 0.0 |
HOH |
3.490 |
O |
O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLU | A:18 | A:18 | 108.0 | 0.568 | E | -130.7 | 120.8 | 108.0 | 0.568 | 0.0 |
UNL HOH |
3.765 3.501 |
O O |
O O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLU | A:18 | A:18 | 108.0 | 0.568 | E | -132.0 | 123.2 | 108.0 | 0.568 | 0.0 |
HOH |
7.396 |
O |
O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | GLU | A:18 | A:18 | 110.0 | 0.579 | E | -139.6 | 119.8 | 110.0 | 0.579 | 0.0 |
HOH |
3.095 |
OE2 |
O |
||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLU | A:18 | A:18 | 109.0 | 0.574 | E | -136.0 | 121.9 | 109.0 | 0.574 | 0.0 |
HOH |
3.629 |
O |
O |
||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLU | A:18 | A:18 | 98.0 | 0.516 | E | -143.8 | 115.8 | 98.0 | 0.516 | 0.0 |
HOH |
7.346 |
O |
O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLU | A:18 | A:18 | 105.0 | 0.553 | E | -129.6 | 123.0 | 105.0 | 0.553 | 0.0 |
HOH |
7.757 |
O |
O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | GLU | A:61 | A:61 | 85.0 | 0.447 | E | -127.6 | 123.8 | |