Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 224547 . C A CCDS3853.1:NM_004168.2:c.223Cga>Aga_NP_004159.2:p.75R>R Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 ARG A:43 A:75 5.0 0.022 H -68.4 -38.5 5.0 0.022 0.0 FAD
HOH
 8.001
4.836
 N
NH1
 O1P
O
ARG C:43 C:75 4.0 0.018 H -67.6 -38.1 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 ARG A:75 A:33 12.0 0.053 H -55.8 -48.3 12.0 0.053 0.0 FAD
HOH
 7.738
7.306
 N
NH2
 O1P
O
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 ARG A:75 A:33 11.0 0.049 H -58.8 -42.3 11.0 0.049 0.0 FAD
 7.740
 N
 O1P
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 ARG A:33 A:33 6.0 0.027 H -60.5 -35.5 6.0 0.027 0.0 FAD
HOH
 7.679
2.850
 N
NH2
 O1P
O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 ARG A:33 A:33 7.0 0.031 H -61.0 -37.0 7.0 0.031 0.0 FAD
 7.818
 N
 O1P
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:33 A:33 10.0 0.044 H -56.0 -42.1 10.0 0.044 0.0 FAD
 7.894
 N
 O1P
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:33 A:33 8.0 0.036 H -59.3 -38.1 8.0 0.036 0.0 FAD
 7.860
 N
 O1P
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:33 A:33 4.0 0.018 H -58.0 -38.9 4.0 0.018 0.0 FAD
 7.636
 N
 O1P
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:33 A:33 10.0 0.044 H -55.2 -39.9 10.0 0.044 0.0 FAD
 7.496
 N
 O1P
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:33 A:33 5.0 0.022 H -60.0 -35.8 5.0 0.022 0.0 FAD
 7.783
 N
 O1P
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:33 A:33 5.0 0.022 H -67.4 -38.1 5.0 0.022 0.0 FAD
 7.636
 N
 O1P
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:33 A:33 11.0 0.049 H -58.0 -26.4 11.0 0.049 0.0 FAD
 7.816
 N
 O1P
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:33 A:33 12.0 0.053 H -65.8 -36.9 12.0 0.053 0.0 FAD
 7.898
 N
 O1P
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:33 A:33 5.0 0.022 H -59.2 -39.3 5.0 0.022 0.0 FAD
 7.938
 N
 O1P
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:33 A:33 8.0 0.036 H -60.8 -37.3 8.0 0.036 0.0 FAD
 7.804
 N
 O1P
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:33 A:33 11.0 0.049 H -56.1 -42.5 11.0 0.049 0.0 FAD
 7.610
 N
 O1P
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:33 A:33 8.0 0.036 H -53.7 -39.3 8.0 0.036 0.0 FAD
 7.657
 N
 O1P
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:33 A:33 5.0 0.022 H -51.4 -36.2 5.0 0.022 0.0 FAD
 7.845
 N
 O1P
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:33 A:33 11.0 0.049 H -61.0 -39.0 11.0 0.049 0.0 FAD
 7.623
 N
 O1P
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:33 A:33 9.0 0.04 H -53.1 -42.1 9.0 0.04 0.0 FAD
 7.932
 N
 O1P
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:33 A:33 6.0 0.027 H -55.2 -37.9 6.0 0.027 0.0 FAD
 7.785
 N
 O1P
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:33 A:33 8.0 0.036 H -66.7 -39.1 8.0 0.036 0.0 FAD
 7.521
 N
 O1P
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 ARG A:33 A:33 5.0 0.022 H -58.1 -43.5 5.0 0.022 0.0 FAD
HOH
 7.756
2.819
 N
NH1
 O1P
O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 ARG A:33 A:33 9.0 0.04 H -56.7 -43.2 9.0 0.04 0.0 FAD
HOH
 7.691
5.204
 N
NH1
 O1P
O
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 ARG A:32 A:32 0.0 0.0 H -61.9 -38.6 0.0 0.0 0.0 FAD
HOH
 7.731
2.921
 N
NH2
 O1P
O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 ARG A:32 A:32 0.0 0.0 H -60.5 -34.5 0.0 0.0 0.0 FAD
HOH
 7.612
4.158
 N
NE
 O1P
O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 ARG A:32 A:32 1.0 0.004 H -60.8 -40.4 1.0 0.004 0.0 FAD
UNL
UNL
HOH
 7.671
9.607
4.130
3.279
 N
NH2
NH2
NH2
 O1P
O3
O
O
ARG E:32 N:32 4.0 0.018 H -61.8 -39.5 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ARG A:32 A:32 1.0 0.004 H -64.2 -40.4 1.0 0.004 0.0 FAD
HOH
 7.836
3.556
 N
NH2
 O1P
O
ARG E:32 N:32 1.0 0.004 H -63.0 -40.4 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ARG A:32 A:32 0.0 0.0 H -63.1 -29.7 0.0 0.0 0.0 FAD
HOH
 7.885
3.771
 N
NE
 O1P
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 ARG A:32 A:32 1.0 0.004 H -62.3 -39.9 1.0 0.004 0.0 FAD
HOH
 7.660
3.331
 N
NH2
 O1P
O
ARG E:32 N:32 1.0 0.004 H -61.7 -39.7 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:32 A:32 3.0 0.013 H -65.8 -36.0 3.0 0.013 0.0 FAD
UNL
UNL
HOH
 7.697
4.367
3.500
4.045
 N
NH2
NH2
NH2
 O1P
O
O
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:32 A:32 4.0 0.018 H -62.1 -38.0 4.0 0.018 0.0 FAD
UNL
UNL
HOH
 7.722
3.681
9.356
3.699
 N
NH1
NH2
NH2
 O1P
N1
C
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:32 A:32 4.0 0.018 H -62.1 -43.4 4.0 0.018 0.0 FAD
UNL
HOH
 7.597
3.814
3.844
 N
NH2
NH2
 O1P
O
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 ARG A:32 A:32 0.0 0.0 H -59.2 -40.1 0.0 0.0 0.0 FAD
HOH
 7.864
4.309
 N
NE
 O1P
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:32 A:32 0.0 0.0 H -61.3 -42.1 0.0 0.0 0.0 FAD
UNL
HOH
 7.877
4.947
3.987
 N
NH1
NE
 O1P
O
O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:32 A:32 2.0 0.009 H -60.5 -36.1 2.0 0.009 0.0 FAD
UNL
HOH
 7.658
7.039
3.731
 N
N
NE
 O1P
O
O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:32 A:32 3.0 0.013 H -61.4 -43.2 3.0 0.013 0.0 FAD
UNL
HOH
 7.633
3.675
3.897
 N
NH2
NH2
 O1P
O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 ARG A:75 A:75 4.0 0.018 H -61.5 -36.8