Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 224568 . G A CCDS3853.1:NM_004168.2:c.244Gag>Aag_NP_004159.2:p.82E>K Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 GLU A:50 A:82 83.0 0.437 H -65.0 -33.4 83.0 0.437 0.0 HOH
 4.094
 OE1
 O
GLU C:50 C:82 92.0 0.484 H -63.0 -29.4 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 GLU A:82 A:40 101.0 0.532 H -49.4 -41.8 99.0 0.521 0.011 B:Q007T0:0.011
 HOH
 9.456
 OE2
 O
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 GLU A:82 A:40 96.0 0.505 H -53.0 -50.9 92.0 0.484 0.021 B:Q007T0:0.021
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 GLU A:40 A:40 92.0 0.484 H -51.5 -28.9 92.0 0.484 0.0 HOH
 3.290
 OE2
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 GLU A:40 A:40 92.0 0.484 H -57.1 -28.2 92.0 0.484 0.0
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:40 A:40 107.0 0.563 H -65.0 -37.6 102.0 0.537 0.026 B:Q007T0:0.026
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:40 A:40 96.0 0.505 H -56.3 -34.2 96.0 0.505 0.0
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:40 A:40 91.0 0.479 H -58.5 -29.6 91.0 0.479 0.0
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:40 A:40 99.0 0.521 H -65.2 -35.1 96.0 0.505 0.016 B:Q007T0:0.016
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:40 A:40 94.0 0.495 H -52.9 -45.4 94.0 0.495 0.0
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:40 A:40 95.0 0.5 H -59.7 -38.3 95.0 0.5 0.0
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:40 A:40 98.0 0.516 H -64.6 -35.6 93.0 0.489 0.027 B:Q007T0:0.026
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:40 A:40 97.0 0.511 H -70.0 -33.4 97.0 0.511 0.0
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:40 A:40 91.0 0.479 H -65.8 -29.9 91.0 0.479 0.0
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:40 A:40 85.0 0.447 H -70.4 -35.9 82.0 0.432 0.015 B:Q007T0:0.016
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:40 A:40 92.0 0.484 H -63.5 -36.3 88.0 0.463 0.021 B:Q007T0:0.021
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:40 A:40 102.0 0.537 H -60.0 -39.6 99.0 0.521 0.016 B:Q007T0:0.016
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:40 A:40 85.0 0.447 H -68.0 -38.4 85.0 0.447 0.0
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:40 A:40 96.0 0.505 H -64.1 -34.5 93.0 0.489 0.016 B:Q007T0:0.016
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:40 A:40 101.0 0.532 H -60.0 -39.1 97.0 0.511 0.021 B:Q007T0:0.021
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:40 A:40 105.0 0.553 H -51.7 -40.0 100.0 0.526 0.027 B:Q007T0:0.026
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:40 A:40 98.0 0.516 H -59.8 -36.6 98.0 0.516 0.0
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLU A:40 A:40 79.0 0.416 H -49.6 -38.1 76.0 0.4 0.016 B:Q007T0:0.016
 HOH
 2.706
 OE2
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLU A:40 A:40 99.0 0.521 H -58.9 -37.0 99.0 0.521 0.0 HOH
 4.023
 CB
 O
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 GLU A:39 A:39 95.0 0.5 H -56.4 -34.0 93.0 0.489 0.011 B:Q9YHT2:0.011
 UNL
UNL
HOH
 9.414
9.615
2.266
 N
O
OE1
 O1
O1
O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 GLU A:39 A:39 90.0 0.474 H -55.2 -40.8 90.0 0.474 0.0 HOH
 3.349
 OE1
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 GLU A:39 A:39 82.0 0.432 H -63.9 -24.7 79.0 0.416 0.016 B:Q9YHT2:0.016
 UNL
UNL
UNL
UNL
UNL
HOH
 8.184
7.240
5.314
7.122
7.367
2.706
 O
O
OE1
O
CB
O
 O1
O
O
O
N3
O
GLU E:39 N:39 101.0 0.532 H -63.4 -28.4 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLU A:39 A:39 87.0 0.458 H -68.1 -17.7 82.0 0.432 0.026 B:Q9YHT2:0.026
 HOH
 2.765
 OE2
 O
GLU E:39 N:39 88.0 0.463 H -69.5 -17.5 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLU A:39 A:39 83.0 0.437 H -67.7 -21.6 83.0 0.437 0.0 UNL
UNL
HOH
 9.730
9.819
3.233
 N
O
OE1
 O1
O1
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 GLU A:39 A:39 91.0 0.479 H -70.2 -17.1 83.0 0.437 0.042 B:Q9YHT2:0.042
 UNL
HOH
 5.558
2.752
 O
O
 C2
O
GLU E:39 N:39 91.0 0.479 H -70.1 -16.7 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:39 A:39 99.0 0.521 H -48.3 -39.0 99.0 0.521 0.0 UNL
UNL
HOH
 3.466
4.010
2.761
 OE1
OE1
OE2
 O
O
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:39 A:39 107.0 0.563 H -63.4 -32.0 107.0 0.563 0.0 UNL
HOH
 3.005
3.045
 OE1
OE1
 N1
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:39 A:39 99.0 0.521 H -65.3 -24.4 99.0 0.521 0.0 UNL
HOH
 4.331
2.989
 OE1
OE1
 O
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 GLU A:39 A:39 78.0 0.411 H -51.3 -32.9 78.0 0.411 0.0 UNL
HOH
 9.650
3.247
 OE2
OE1
 N1
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:39 A:39 73.0 0.384 H -52.1 -39.3 73.0 0.384 0.0 UNL
HOH
 3.964
6.890
 OE1
N
 O
O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:39 A:39 97.0 0.511 H -62.4 -26.9 97.0 0.511 0.0 HOH
 2.815
 OE2
 O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:39 A:39 100.0 0.526 H -57.9 -31.9 100.0 0.526 0.0 UNL
HOH
 4.182
3.027
 OE1
OE1
 O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 GLU A:82 A:82 97.0 0.511 H -62.2 -38.3