Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 224572 | . | C | A | CCDS3853.1:NM_004168.2:c.248gCa>gAa_NP_004159.2:p.83A>E | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | ALA | A:51 | A:83 | 28.0 | 0.243 | T | -73.0 | -10.8 | 28.0 | 0.243 | 0.0 |
HOH |
4.256 |
N |
O |
||
| ALA | C:51 | C:83 | 21.0 | 0.183 | T | -78.2 | -3.0 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | ALA | A:83 | A:41 | 43.0 | 0.374 | T | -74.7 | 5.0 | 43.0 | 0.374 | 0.0 | ||||||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | ALA | A:83 | A:41 | 46.0 | 0.4 | T | -57.1 | -7.8 | 46.0 | 0.4 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | ALA | A:41 | A:41 | 37.0 | 0.322 | T | -83.8 | -6.9 | 37.0 | 0.322 | 0.0 |
HOH |
4.493 |
CB |
O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | ALA | A:41 | A:41 | 38.0 | 0.33 | T | -83.5 | -11.1 | 38.0 | 0.33 | 0.0 | ||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ALA | A:41 | A:41 | 42.0 | 0.365 | T | -76.9 | 8.7 | 42.0 | 0.365 | 0.0 | ||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ALA | A:41 | A:41 | 39.0 | 0.339 | T | -87.3 | 10.7 | 39.0 | 0.339 | 0.0 | ||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ALA | A:41 | A:41 | 46.0 | 0.4 | T | -92.6 | 8.9 | 46.0 | 0.4 | 0.0 | ||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ALA | A:41 | A:41 | 33.0 | 0.287 | T | -73.6 | -8.6 | 33.0 | 0.287 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ALA | A:41 | A:41 | 45.0 | 0.391 | T | -81.9 | 14.3 | 45.0 | 0.391 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ALA | A:41 | A:41 | 45.0 | 0.391 | H | -78.3 | -14.0 | 45.0 | 0.391 | 0.0 | ||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ALA | A:41 | A:41 | 42.0 | 0.365 | T | -80.2 | 7.9 | 42.0 | 0.365 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ALA | A:41 | A:41 | 45.0 | 0.391 | H | -70.9 | -24.9 | 45.0 | 0.391 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ALA | A:41 | A:41 | 48.0 | 0.417 | H | -78.9 | -27.5 | 48.0 | 0.417 | 0.0 | ||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ALA | A:41 | A:41 | 58.0 | 0.504 | H | -75.2 | -30.0 | 58.0 | 0.504 | 0.0 | ||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ALA | A:41 | A:41 | 41.0 | 0.357 | H | -71.9 | -16.9 | 41.0 | 0.357 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ALA | A:41 | A:41 | 39.0 | 0.339 | T | -74.3 | -3.1 | 39.0 | 0.339 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ALA | A:41 | A:41 | 42.0 | 0.365 | H | -76.7 | -14.4 | 42.0 | 0.365 | 0.0 | ||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ALA | A:41 | A:41 | 32.0 | 0.278 | T | -73.0 | -11.7 | 32.0 | 0.278 | 0.0 | ||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ALA | A:41 | A:41 | 46.0 | 0.4 | T | -77.0 | 9.1 | 46.0 | 0.4 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ALA | A:41 | A:41 | 40.0 | 0.348 | T | -73.8 | -0.3 | 40.0 | 0.348 | 0.0 | ||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ALA | A:41 | A:41 | 62.0 | 0.539 | H | -74.1 | -31.4 | 62.0 | 0.539 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | ALA | A:41 | A:41 | 46.0 | 0.4 | T | -87.1 | 9.1 | 46.0 | 0.4 | 0.0 |
HOH |
3.891 |
CB |
O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | ALA | A:41 | A:41 | 45.0 | 0.391 | T | -79.5 | 6.1 | 45.0 | 0.391 | 0.0 |
HOH |
3.966 |
CB |
O |
||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | ALA | A:40 | A:40 | 48.0 | 0.417 | T | -81.1 | -1.2 | 48.0 | 0.417 | 0.0 |
UNL HOH |
6.861 3.860 |
CB CB |
O1 O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | ALA | A:40 | A:40 | 51.0 | 0.443 | T | -81.8 | 11.5 | 51.0 | 0.443 | 0.0 |
HOH |
3.696 |
CB |
O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | ALA | A:40 | A:40 | 48.0 | 0.417 | T | -89.2 | 7.4 | 48.0 | 0.417 | 0.0 |
UNL UNL UNL UNL HOH |
5.114 3.597 3.476 9.816 3.826 |
O O O N CB |
O2 O O N3 O |
||
| ALA | E:40 | N:40 | 48.0 | 0.417 | T | -88.0 | 7.1 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | ALA | A:40 | A:40 | 49.0 | 0.426 | T | -92.9 | 7.0 | 49.0 | 0.426 | 0.0 |
HOH |
2.784 |
O |
O |
||
| ALA | E:40 | N:40 | 47.0 | 0.409 | T | -93.2 | 6.4 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | ALA | A:40 | A:40 | 45.0 | 0.391 | T | -96.1 | 1.2 | 45.0 | 0.391 | 0.0 |
UNL HOH |
7.218 3.936 |
CB CB |
O1 O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | ALA | A:40 | A:40 | 48.0 | 0.417 | T | -91.6 | 5.3 | 48.0 | 0.417 | 0.0 |
UNL HOH |
4.018 3.004 |
CB O |
C2 O |
||
| ALA | E:40 | N:40 | 47.0 | 0.409 | T | -91.7 | 4.3 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | ALA | A:40 | A:40 | 43.0 | 0.374 | T | -79.2 | 6.3 | 43.0 | 0.374 | 0.0 |
UNL UNL HOH |
5.025 7.089 5.885 |
N N C |
O O O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | ALA | A:40 | A:40 | 45.0 | 0.391 | T | -82.0 | 0.3 | 45.0 | 0.391 | 0.0 |
UNL HOH |
4.018 4.539 |
CB CB |
N3 O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | ALA | A:40 | A:40 | 46.0 | 0.4 | T | -86.9 | 6.8 | 46.0 | 0.4 | 0.0 |
UNL HOH |
7.177 2.567 |
CB O |
O O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | ALA | A:40 | A:40 | 47.0 | 0.409 | T | -93.5 | 17.2 | 47.0 | 0.409 | 0.0 |
HOH |
4.838 |
CB |
O |
||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | ALA | A:40 | A:40 | 40.0 | 0.348 | T | -90.0 | 20.1 | 40.0 | 0.348 | 0.0 |
UNL HOH |
5.408 6.546 |
CB CB |
O O |
||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | ALA | A:40 | A:40 | 41.0 | 0.357 | T | -93.1 | 15.7 | 41.0 | 0.357 | 0.0 |
HOH |
5.636 |
N |
O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | ALA | A:40 | A:40 | 46.0 | 0.4 | T | -84.0 | 6.7 | 46.0 | 0.4 | 0.0 |
UNL HOH |
7.124 4.038 |
CB CB |
O O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | ALA | A:83 | A:83 | 26.0 | 0.226 | T | -77.1 | 5.1 | |