Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 224591 | . | T | A | CCDS3853.1:NM_004168.2:c.267tgT>tgA_NP_004159.2:p.89C>* | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | CYS | A:57 | A:89 | 0.0 | 0.0 | E | -127.1 | 105.7 | 0.0 | 0.0 | 0.0 |
FAD HOH |
7.113 7.444 |
SG SG |
O3B O |
||
| CYS | C:57 | C:89 | 0.0 | 0.0 | E | -128.9 | 102.9 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | CYS | A:89 | A:47 | 0.0 | 0.0 | E | -142.6 | 108.0 | 0.0 | 0.0 | 0.0 |
FAD |
7.008 |
SG |
O3B |
||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | CYS | A:89 | A:47 | 0.0 | 0.0 | E | -123.8 | 96.9 | 0.0 | 0.0 | 0.0 |
FAD |
6.703 |
SG |
O3B |
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| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -133.4 | 111.4 | 0.0 | 0.0 | 0.0 |
FAD HOH |
6.903 6.778 |
SG O |
O3B O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | CYS | A:47 | A:47 | 1.0 | 0.007 | E | -131.5 | 114.7 | 1.0 | 0.007 | 0.0 |
FAD |
7.053 |
SG |
O3B |
||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -123.9 | 113.7 | 0.0 | 0.0 | 0.0 |
FAD |
7.051 |
SG |
O3B |
||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -126.8 | 110.5 | 0.0 | 0.0 | 0.0 |
FAD |
7.016 |
SG |
O3B |
||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -113.7 | 114.8 | 0.0 | 0.0 | 0.0 |
FAD |
6.970 |
SG |
O3B |
||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -125.9 | 107.8 | 0.0 | 0.0 | 0.0 |
FAD |
7.271 |
SG |
O3B |
||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -114.5 | 113.3 | 0.0 | 0.0 | 0.0 |
FAD |
6.895 |
SG |
O3B |
||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -129.7 | 113.4 | 0.0 | 0.0 | 0.0 |
FAD |
7.314 |
SG |
O3B |
||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -109.0 | 132.0 | 0.0 | 0.0 | 0.0 |
FAD |
6.935 |
SG |
O3B |
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| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -124.2 | 98.9 | 0.0 | 0.0 | 0.0 |
FAD |
7.170 |
SG |
O3B |
||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -117.4 | 119.0 | 0.0 | 0.0 | 0.0 |
FAD |
7.573 |
C |
N3A |
||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -102.6 | 122.6 | 0.0 | 0.0 | 0.0 |
FAD |
7.658 |
C |
C8A |
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| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -125.6 | 109.0 | 0.0 | 0.0 | 0.0 |
FAD |
7.203 |
C |
N3A |
||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -128.8 | 114.6 | 0.0 | 0.0 | 0.0 |
FAD |
7.358 |
SG |
O3B |
||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -131.3 | 119.7 | 0.0 | 0.0 | 0.0 |
FAD |
7.377 |
C |
N3A |
||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -104.2 | 119.8 | 0.0 | 0.0 | 0.0 |
FAD |
7.021 |
SG |
O3B |
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| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -124.7 | 106.0 | 0.0 | 0.0 | 0.0 |
FAD |
7.115 |
SG |
O3B |
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| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -137.4 | 120.0 | 0.0 | 0.0 | 0.0 |
FAD |
7.036 |
SG |
O3B |
||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -139.2 | 98.5 | 0.0 | 0.0 | 0.0 |
FAD |
7.307 |
C |
C2A |
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| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -111.4 | 137.5 | 0.0 | 0.0 | 0.0 |
FAD HOH |
7.062 6.694 |
SG O |
O3B O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | CYS | A:47 | A:47 | 0.0 | 0.0 | E | -121.9 | 130.9 | 0.0 | 0.0 | 0.0 |
FAD HOH |
7.375 8.574 |
SG O |
O3B O |
||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | CYS | A:46 | A:46 | 0.0 | 0.0 | E | -121.1 | 122.4 | 0.0 | 0.0 | 0.0 |
FAD HOH |
7.087 6.529 |
SG CB |
O3B O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | CYS | A:46 | A:46 | 0.0 | 0.0 | E | -125.0 | 119.7 | 0.0 | 0.0 | 0.0 |
FAD HOH |
6.790 6.924 |
SG N |
O3B O |
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| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | CYS | A:46 | A:46 | 0.0 | 0.0 | E | -121.6 | 113.3 | 0.0 | 0.0 | 0.0 |
FAD UNL UNL UNL UNL UNL HOH |
7.198 8.319 9.459 7.853 7.900 9.904 6.699 |
SG CB O O O O CB |
O3B O C O O O O |
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| CYS | E:46 | N:46 | 0.0 | 0.0 | E | -122.2 | 113.8 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | CYS | A:46 | A:46 | 0.0 | 0.0 | E | -120.1 | 111.3 | 0.0 | 0.0 | 0.0 |
FAD HOH |
7.088 6.653 |
SG O |
O3B O |
||
| CYS | E:46 | N:46 | 0.0 | 0.0 | E | -121.4 | 110.4 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | CYS | A:46 | A:46 | 0.0 | 0.0 | E | -111.3 | 121.5 | 0.0 | 0.0 | 0.0 |
FAD HOH |
6.979 6.956 |
SG N |
O3B O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | CYS | A:46 | A:46 | 0.0 | 0.0 | E | -121.4 | 110.3 | 0.0 | 0.0 | 0.0 |
AZI FAD HOH |
6.899 6.998 6.640 |
O SG CB |
N3 O3B O |
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| CYS | E:46 | N:46 | 0.0 | 0.0 | E | -122.0 | 110.9 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | CYS | A:46 | A:46 | 0.0 | 0.0 | E | -108.9 | 114.2 | 0.0 | 0.0 | 0.0 |
FAD UNL HOH |
7.100 8.335 7.109 |
SG O N |
O3B N1 O |
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| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | CYS | A:46 | A:46 | 0.0 | 0.0 | E | -115.8 | 111.8 | 0.0 | 0.0 | 0.0 |
FAD UNL UNL UNL HOH |
7.320 9.859 8.289 7.758 7.084 |
SG O O O N |
O3B O O S2 O |
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| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | CYS | A:46 | A:46 | 0.0 | 0.0 | E | -117.1 | 118.0 | 0.0 | 0.0 | 0.0 |
FAD UNL HOH |
7.136 9.104 6.919 |
SG O O |
O3B C2 O |
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| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | CYS | A:46 | A:46 | 0.0 | 0.0 | E | -115.4 | 108.4 | 0.0 | 0.0 | 0.0 |
FAD UNL HOH |
7.547 7.838 7.295 |
SG O N |
O3B C3 O |
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| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | CYS | A:46 | A:46 | 0.0 | 0.0 | E | -125.0 | 111.8 | 0.0 | 0.0 | 0.0 |
FAD UNL HOH |
7.494 7.826 7.110 |
C O N |
C2A C3 O |
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| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | CYS | A:46 | A:46 | 0.0 | 0.0 | E | -126.5 | 108.4 | 0.0 | 0.0 | 0.0 |
FAD UNL UNL HOH |
7.456 7.862 8.779 6.986 |
C SG O N |
N3A O C2 O |
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| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | CYS | A:46 | A:46 | 0.0 | 0.0 | E | -124.1 | 116.5 | 0.0 | 0.0 | 0.0 |
FAD UNL HOH |
7.252 9.151 6.810 |
SG O O |
O3B C2 O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | CYS | A:89 | A:89 | 0.0 | 0.0 | E | -116.9 | 108.8 | |