Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 224608 . C A CCDS3853.1:NM_004168.2:c.284cCt>cAt_NP_004159.2:p.95P>H Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 PRO A:63 A:95 1.0 0.007 G -51.6 -34.6 1.0 0.007 0.0 FAD
HOH
 5.304
7.761
 O
N
 O3B
O
PRO C:63 C:95 0.0 0.0 G -55.3 -40.1 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 PRO A:95 A:53 1.0 0.007 G -39.6 -57.1 1.0 0.007 0.0 FAD
HOH
 4.990
7.572
 O
N
 O3B
O
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 PRO A:95 A:53 0.0 0.0 G -46.1 -40.7 0.0 0.0 0.0 FAD
 5.102
 O
 O3B
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 PRO A:53 A:53 1.0 0.007 G -34.7 -45.5 1.0 0.007 0.0 FAD
HOH
 4.901
5.972
 O
CD
 O3B
O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 PRO A:53 A:53 0.0 0.0 G -36.0 -47.1 0.0 0.0 0.0 FAD
 5.054
 O
 O3B
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 PRO A:53 A:53 1.0 0.007 G -44.5 -43.2 1.0 0.007 0.0 FAD
 5.211
 O
 O3B
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 PRO A:53 A:53 2.0 0.014 G -34.5 -48.8 2.0 0.014 0.0 FAD
 5.152
 O
 O3B
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 PRO A:53 A:53 1.0 0.007 G -50.9 -36.3 1.0 0.007 0.0 FAD
 5.140
 O
 O3B
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 PRO A:53 A:53 1.0 0.007 G -44.2 -38.8 1.0 0.007 0.0 FAD
 5.001
 CA
 O3B
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 PRO A:53 A:53 2.0 0.014 G -38.3 -50.4 2.0 0.014 0.0 FAD
 5.211
 O
 O3B
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 PRO A:53 A:53 1.0 0.007 G -44.4 -31.9 1.0 0.007 0.0 FAD
 5.257
 CA
 O3B
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 PRO A:53 A:53 2.0 0.014 G -31.2 -48.8 2.0 0.014 0.0 FAD
 5.274
 CA
 O3B
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 PRO A:53 A:53 1.0 0.007 G -39.3 -39.2 1.0 0.007 0.0 FAD
 5.230
 CA
 O3B
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 PRO A:53 A:53 1.0 0.007 G -40.7 -36.2 1.0 0.007 0.0 FAD
 4.944
 O
 O3B
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 PRO A:53 A:53 1.0 0.007 T -37.9 -37.7 1.0 0.007 0.0 FAD
 5.447
 O
 O3B
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 PRO A:53 A:53 1.0 0.007 G -43.1 -34.9 1.0 0.007 0.0 FAD
 4.670
 O
 O3B
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 PRO A:53 A:53 1.0 0.007 G -48.1 -38.2 1.0 0.007 0.0 FAD
 5.055
 O
 O3B
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 PRO A:53 A:53 2.0 0.014 G -38.3 -52.3 2.0 0.014 0.0 FAD
 5.011
 O
 O3B
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 PRO A:53 A:53 1.0 0.007 T -42.2 -39.0 1.0 0.007 0.0 FAD
 4.773
 CA
 O3B
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 PRO A:53 A:53 1.0 0.007 G -32.2 -58.5 1.0 0.007 0.0 FAD
 4.745
 O
 O3B
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 PRO A:53 A:53 2.0 0.014 G -35.2 -48.8 2.0 0.014 0.0 FAD
 4.874
 O
 O3B
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 PRO A:53 A:53 0.0 0.0 G -37.8 -47.1 0.0 0.0 0.0 FAD
 5.348
 O
 O3B
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 PRO A:53 A:53 2.0 0.014 G -36.0 -49.7 2.0 0.014 0.0 FAD
HOH
 4.833
6.608
 O
N
 O3B
O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 PRO A:53 A:53 1.0 0.007 G -40.0 -43.4 1.0 0.007 0.0 FAD
HOH
 4.979
6.809
 O
CG
 O3B
O
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 PRO A:52 A:52 0.0 0.0 G -41.0 -41.4 0.0 0.0 0.0 FAD
HOH
 4.773
4.946
 O
CD
 O3B
O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 PRO A:52 A:52 1.0 0.007 G -32.9 -47.8 1.0 0.007 0.0 FAD
HOH
 5.070
4.998
 O
CD
 O3B
O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 PRO A:52 A:52 1.0 0.007 G -50.0 -45.4 1.0 0.007 0.0 FAD
UNL
UNL
UNL
UNL
UNL
UNL
HOH
 5.056
8.666
9.392
9.754
7.041
9.008
8.498
5.602
 O
CG
CD
CG
CD
CD
CD
CG
 O3B
C
C
O
O
O
O
O
PRO E:52 N:52 1.0 0.007 G -50.5 -48.0 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 PRO A:52 A:52 1.0 0.007 G -47.7 -44.5 1.0 0.007 0.0 FAD
HOH
 4.937
4.273
 O
CD
 O3B
O
PRO E:52 N:52 1.0 0.007 G -45.7 -45.5 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 PRO A:52 A:52 0.0 0.0 G -30.7 -58.8 0.0 0.0 0.0 FAD
UNL
HOH
 5.061
8.100
6.065
 O
CD
CD
 O3B
O1
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 PRO A:52 A:52 1.0 0.007 G -41.1 -50.6 1.0 0.007 0.0 AZI
FAD
HOH
 8.116
5.026
4.291
 CD
O
CD
 N3
O3B
O
PRO E:52 N:52 1.0 0.007 G -40.8 -51.4 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 PRO A:52 A:52 0.0 0.0 G -49.5 -39.9 0.0 0.0 0.0 FAD
UNL
UNL
UNL
UNL
HOH
 4.874
5.850
6.262
7.123
7.892
6.299
 O
CG
N
N
O
C
 O3B
N1
N3
N1
N3
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 PRO A:52 A:52 0.0 0.0 G -49.4 -41.8 0.0 0.0 0.0 FAD
UNL
UNL
UNL
HOH
 5.039
9.001
7.212
5.859
6.382
 O
CD
N
CG
C
 O3B
O
N1
S2
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 PRO A:52 A:52 0.0 0.0 G -59.8 -37.3 0.0 0.0 0.0 FAD
UNL
UNL
UNL
UNL
HOH
 5.066
7.952
6.077
6.973
6.998
6.389
 O
O
N
N
CD
C
 O3B
N3
N3
N1
C1
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 PRO A:52 A:52 0.0 0.0 G -48.8 -39.8 0.0 0.0 0.0 FAD
UNL
UNL
HOH
 4.896
5.347
7.095
6.047
 O
CD
N
N
 O3B
C2
N1
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 PRO A:52 A:52 0.0 0.0 G -48.3 -41.4 0.0 0.0 0.0 FAD
UNL
UNL
HOH
 4.817
5.226
7.810
6.399
 O
CD
O
C
 O3B
C2
O
O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 PRO A:52 A:52 0.0 0.0 G -49.2 -39.3 0.0 0.0 0.0 FAD
UNL
UNL
UNL
UNL
UNL
UNL
HOH
 4.877
7.976
6.429
9.778
7.942
7.273
6.968
6.362
 O
O
N
O
O
N
CG
C
 O3B
N3
N3
O
O
N2
C1
O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 PRO A:52 A:52 1.0 0.007 G -51.4 -40.8 1.0 0.007 0.0 FAD
UNL
UNL
UNL
UNL
HOH
 4.854
7.844
5.999
6.970
7.024
6.426
 O
O
N
N
CD
C
 O3B
N3
N3
N1
C1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 PRO A:95 A:95 1.0 0.007 G -48.7 -43.8