Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 224622 . A C CCDS3853.1:NM_004168.2:c.298Act>Cct_NP_004159.2:p.100T>P Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 THR A:68 A:100 20.0 0.143 G -56.3 -32.3 20.0 0.143 0.0 FAD
OAA
HOH
 2.505
9.401
4.297
 OG1
O
O
 O2A
O4
O
THR C:68 C:100 17.0 0.121 G -63.8 -30.5 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 THR A:100 A:58 16.0 0.114 G -46.6 -34.9 16.0 0.114 0.0 FAD
 2.830
 CG2
 O1A
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 THR A:100 A:58 22.0 0.157 G -58.4 -25.6 22.0 0.157 0.0 FAD
 2.572
 CG2
 O1A
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 THR A:58 A:58 19.0 0.136 G -54.3 -20.1 19.0 0.136 0.0 FAD
HOH
 2.711
2.797
 CG2
N
 O1A
O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 THR A:58 A:58 19.0 0.136 G -54.9 -17.0 19.0 0.136 0.0 FAD
3NP
 2.704
9.822
 OG1
O
 O1A
O3
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:58 A:58 20.0 0.143 G -60.5 -6.2 20.0 0.143 0.0 FAD
MLI
 2.619
9.203
 CG2
O
 O1A
O7
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:58 A:58 20.0 0.143 G -55.8 -24.4 20.0 0.143 0.0 FAD
MLI
 2.706
9.387
 OG1
O
 O1A
C1
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:58 A:58 20.0 0.143 G -58.3 -12.7 20.0 0.143 0.0 FAD
MLI
 2.551
9.438
 CG2
O
 O2A
O6
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:58 A:58 18.0 0.129 T -66.3 -28.2 18.0 0.129 0.0 FAD
 2.658
 CG2
 O4'
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:58 A:58 18.0 0.129 G -48.8 -16.5 18.0 0.129 0.0 FAD
MLI
 2.912
9.285
 CG2
O
 O1A
O8
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:58 A:58 21.0 0.15 G -82.0 -19.2 21.0 0.15 0.0 FAD
MLI
 3.185
9.301
 CG2
O
 O1A
O8
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:58 A:58 18.0 0.129 G -69.0 -12.4 18.0 0.129 0.0 FAD
 2.713
 CG2
 O1A
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:58 A:58 21.0 0.15 G -58.4 -17.3 21.0 0.15 0.0 FAD
 2.888
 CG2
 O4'
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:58 A:58 18.0 0.129 G -65.8 -25.4 18.0 0.129 0.0 FAD
 3.067
 N
 O1A
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:58 A:58 20.0 0.143 G -65.8 -19.3 20.0 0.143 0.0 FAD
MLI
 3.164
9.294
 CG2
O
 O4'
O7
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:58 A:58 17.0 0.121 G -54.4 -25.5 17.0 0.121 0.0 FAD
MLI
 2.404
8.691
 OG1
O
 O2A
O9
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:58 A:58 20.0 0.143 G -53.8 -21.4 20.0 0.143 0.0 FAD
MLI
 2.826
9.347
 CG2
O
 O1A
O7
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:58 A:58 16.0 0.114 G -60.1 -19.4 16.0 0.114 0.0 FAD
 3.054
 CG2
 O4'
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:58 A:58 18.0 0.129 G -54.6 -16.7 18.0 0.129 0.0 FAD
MLI
 2.505
8.892
 CG2
O
 O2A
O7
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:58 A:58 22.0 0.157 G -41.9 -25.1 22.0 0.157 0.0 FAD
 2.727
 CG2
 O4'
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:58 A:58 21.0 0.15 G -56.8 -26.2 21.0 0.15 0.0 FAD
HOH
 2.540
9.573
 CG2
O
 O1A
O
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:58 A:58 22.0 0.157 G -56.3 -12.3 22.0 0.157 0.0 FAD
 3.165
 N
 O1A
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 THR A:58 A:58 23.0 0.164 G -53.6 -27.8 23.0 0.164 0.0 FAD
OAA
HOH
 2.598
8.933
5.171
 CG2
O
O
 O1A
O5
O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 THR A:58 A:58 20.0 0.143 G -51.8 -30.5 20.0 0.143 0.0 FAD
OAA
 2.744
8.748
 CG2
O
 O1A
O5
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 THR A:57 A:57 23.0 0.164 G -46.3 -37.4 23.0 0.164 0.0 FAD
TEO
HOH
 2.694
9.555
5.155
 OG1
O
O
 O2A
O2
O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 THR A:57 A:57 24.0 0.171 G -50.8 -41.0 24.0 0.171 0.0 FAD
3NP
HOH
 2.601
9.393
5.017
 OG1
O
O
 O2A
O2
O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 THR A:57 A:57 21.0 0.15 G -48.7 -34.3 21.0 0.15 0.0 FAD
Y3P
HOH
 2.522
9.583
5.241
 OG1
O
O
 O2A
O2
O
THR E:57 N:57 22.0 0.157 G -45.4 -35.3 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 THR A:57 A:57 24.0 0.171 G -51.8 -35.3 24.0 0.171 0.0 FAD
TEO
HOH
 2.723
9.700
5.214
 OG1
O
O
 O2A
C3
O
THR E:57 N:57 22.0 0.157 G -53.0 -34.0 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 THR A:57 A:57 23.0 0.164 G -55.9 -39.7 23.0 0.164 0.0 FAD
MLI
HOH
 2.758
9.803
5.227
 OG1
O
O
 O2A
O8
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 THR A:57 A:57 22.0 0.157 G -53.9 -31.0 22.0 0.157 0.0 FAD
OAA
HOH
 2.684
9.612
5.079
 OG1
O
O
 O2A
O5
O
THR E:57 N:57 23.0 0.164 G -52.8 -32.6 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 THR A:57 A:57 22.0 0.157 G -48.1 -36.5 22.0 0.157 0.0 FAD
OAA
UNL
HOH
 2.518
9.202
5.747
5.092
 OG1
O
N
O
 O2A
O3
N1
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 THR A:57 A:57 21.0 0.15 G -56.8 -31.2 21.0 0.15 0.0 FAD
OAA
HOH
 2.370
9.271
5.242
 OG1
O
O
 O2A
O3
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 THR A:57 A:57 22.0 0.157 G -51.2 -34.3 22.0 0.157 0.0 FAD
Y3P
UNL
HOH
 2.432
9.427
5.509
5.277
 OG1
O
N
O
 O2A
O3
N1
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 THR A:57 A:57 22.0 0.157 G -48.3 -36.9 22.0 0.157 0.0 FAD
OAA
UNL
UNL
HOH
 2.427
9.591
7.597
7.154
5.107
 OG1
O
OG1
N
O
 O2A
O3
O
O
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 THR A:57 A:57 22.0 0.157 G -54.0 -32.6 22.0 0.157 0.0 FAD
OAA
UNL
HOH
 2.228
9.369
6.011
5.526
 OG1
O
N
O
 O2A
O3
O
O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 THR A:57 A:57 21.0 0.15 G -57.8 -31.4 21.0 0.15 0.0 FAD
OAA
UNL
UNL
UNL
HOH
 2.220
9.109
5.635
5.805
5.565
5.230
 OG1
O
N
N
OG1
N
 O2A
O3
N2
O
O
O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 THR A:57 A:57 20.0 0.143 G -55.0 -32.8 20.0 0.143 0.0 FAD
OAA
UNL
HOH
 2.497
9.440
5.610
5.173
 OG1
O
N
O
 O2A
O3
N1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 THR A:100 A:100 21.0 0.15 G -48.3 -33.7