Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 224634 | . | C | A | CCDS3853.1:NM_004168.2:c.310Cag>Aag_NP_004159.2:p.104Q>K | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
|---|---|---|---|---|---|---|---|
|
|
|
|
|
PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | GLN | A:72 | A:104 | 127.0 | 0.706 | -107.9 | -3.4 | 64.0 | 0.356 | 0.35 |
B:Q9NX18:0.35 |
FAD OAA HOH |
3.837 6.994 4.484 |
N N N |
O4 C2 O |
||
| GLN | C:72 | C:104 | 130.0 | 0.722 | -100.7 | -8.3 | NA | NA | NA | ||||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | GLN | A:104 | A:62 | 29.0 | 0.161 | -131.0 | -41.7 | 14.0 | 0.078 | 0.083 |
B:Q007T0:0.083 |
FAD |
3.664 |
N |
N5 |
||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | GLN | A:104 | A:62 | 29.0 | 0.161 | -100.1 | -46.9 | 10.0 | 0.056 | 0.105 |
B:Q007T0:0.106 |
FAD |
3.627 |
N |
N5 |
||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | GLN | A:62 | A:62 | 30.0 | 0.167 | -118.6 | -42.4 | 20.0 | 0.111 | 0.056 |
B:Q007T0:0.056 |
FAD HOH |
3.256 2.562 |
N NE2 |
O4 O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | GLN | A:62 | A:62 | 30.0 | 0.167 | -123.6 | -49.6 | 16.0 | 0.089 | 0.078 |
B:None:0.078 |
FAD 3NP |
2.811 4.439 |
N C |
O4 O3 |
||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:62 | A:62 | 34.0 | 0.189 | -136.9 | -51.1 | 19.0 | 0.106 | 0.083 |
B:Q007T0:0.083 |
FAD MLI |
3.095 3.596 |
N CB |
O4 O7 |
||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:62 | A:62 | 26.0 | 0.144 | -141.8 | -24.4 | 12.0 | 0.067 | 0.077 |
B:Q007T0:0.078 |
FAD MLI |
3.108 4.525 |
N CG |
O4 O8 |
||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:62 | A:62 | 34.0 | 0.189 | -140.6 | -53.3 | 14.0 | 0.078 | 0.111 |
B:Q007T0:0.111 |
FAD MLI |
3.114 3.643 |
N CB |
O4 O6 |
||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:62 | A:62 | 33.0 | 0.183 | -121.5 | -54.8 | 10.0 | 0.056 | 0.127 |
B:Q007T0:0.128 |
FAD |
2.987 |
N |
O4 |
||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:62 | A:62 | 28.0 | 0.156 | -122.3 | -59.5 | 12.0 | 0.067 | 0.089 |
B:Q007T0:0.089 |
FAD MLI |
3.122 4.336 |
N C |
O4 O7 |
||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:62 | A:62 | 33.0 | 0.183 | -128.4 | -50.2 | 16.0 | 0.089 | 0.094 |
B:Q007T0:0.094 |
FAD MLI |
2.697 4.505 |
N C |
O4 O6 |
||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:62 | A:62 | 27.0 | 0.15 | -126.6 | -55.4 | 19.0 | 0.106 | 0.044 |
B:Q007T0:0.044 |
FAD |
2.766 |
N |
O4 |
||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:62 | A:62 | 31.0 | 0.172 | -122.0 | -33.5 | 12.0 | 0.067 | 0.105 |
B:Q007T0:0.106 |
FAD |
2.954 |
N |
O4 |
||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:62 | A:62 | 35.0 | 0.194 | -121.9 | -36.6 | 13.0 | 0.072 | 0.122 |
B:Q007T0:0.122 |
FAD |
2.869 |
N |
O4 |
||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:62 | A:62 | 32.0 | 0.178 | -125.6 | -30.1 | 19.0 | 0.106 | 0.072 |
B:Q007T0:0.072 |
FAD MLI |
3.253 3.835 |
N C |
O4 O7 |
||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:62 | A:62 | 28.0 | 0.156 | -123.7 | -36.9 | 7.0 | 0.039 | 0.117 |
B:Q007T0:0.117 |
FAD MLI |
2.723 3.584 |
N N |
O4 O9 |
||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:62 | A:62 | 28.0 | 0.156 | -123.5 | -39.1 | 17.0 | 0.094 | 0.062 |
B:Q007T0:0.061 |
FAD MLI |
3.152 3.964 |
N CB |
O4 O7 |
||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:62 | A:62 | 28.0 | 0.156 | -121.4 | -43.8 | 11.0 | 0.061 | 0.095 |
B:Q007T0:0.094 |
FAD |
2.695 |
N |
O4 |
||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:62 | A:62 | 26.0 | 0.144 | -110.0 | -45.1 | 16.0 | 0.089 | 0.055 |
B:Q007T0:0.056 |
FAD MLI |
3.228 3.622 |
N CB |
O4 O7 |
||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:62 | A:62 | 18.0 | 0.1 | -120.5 | -61.5 | 13.0 | 0.072 | 0.028 |
B:Q007T0:0.028 |
FAD |
2.681 |
N |
O4 |
||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:62 | A:62 | 31.0 | 0.172 | -132.8 | -63.5 | 14.0 | 0.078 | 0.094 |
B:Q007T0:0.094 |
FAD HOH |
3.192 4.614 |
N CB |
O4 O |
||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:62 | A:62 | 31.0 | 0.172 | -126.2 | -32.7 | 20.0 | 0.111 | 0.061 |
B:Q007T0:0.061 |
FAD |
3.101 |
N |
O4 |
||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | GLN | A:62 | A:62 | 35.0 | 0.194 | -113.9 | -51.8 | 19.0 | 0.106 | 0.088 |
B:Q007T0:0.089 |
FAD OAA HOH |
3.224 3.320 4.338 |
N CB N |
O4 O5 O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | GLN | A:62 | A:62 | 33.0 | 0.183 | -116.1 | -65.7 | 19.0 | 0.106 | 0.077 |
B:Q007T0:0.078 |
FAD OAA |
3.328 3.440 |
N CB |
O4 O5 |
||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLN | A:61 | A:61 | 30.0 | 0.167 | -121.4 | -64.2 | 15.0 | 0.083 | 0.084 |
B:Q9YHT2:0.083 |
FAD TEO HOH |
3.064 3.901 2.919 |
N C NE2 |
O4 O1A O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLN | A:61 | A:61 | 31.0 | 0.172 | -115.0 | -67.2 | 16.0 | 0.089 | 0.083 |
B:3851612:0.083 |
FAD 3NP HOH |
3.147 3.945 2.700 |
N C NE2 |
O4 O2 O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLN | A:61 | A:61 | 30.0 | 0.167 | -122.1 | -55.1 | 19.0 | 0.106 | 0.061 |
B:Q9YHT2:0.061 |
FAD Y3P HOH |
3.187 3.661 2.965 |
N CB NE2 |
O4 O2 O |
||
| GLN | E:61 | N:61 | 29.0 | 0.161 | -122.9 | -57.4 | NA | NA | NA | ||||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | GLN | A:61 | A:61 | 33.0 | 0.183 | -116.4 | -67.1 | 18.0 | 0.1 | 0.083 |
B:Q9YHT2:0.083 |
FAD TEO HOH |
3.245 3.678 2.830 |
N CB NE2 |
O4 O1A O |
||
| GLN | E:61 | N:61 | 31.0 | 0.172 | -116.3 | -65.5 | NA | NA | NA | ||||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | GLN | A:61 | A:61 | 28.0 | 0.156 | -116.1 | -65.5 | 17.0 | 0.094 | 0.062 |
B:Q9YHT2:0.061 |
FAD MLI HOH |
3.450 4.438 2.831 |
N C NE2 |
O4 O7 O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | GLN | A:61 | A:61 | 31.0 | 0.172 | -118.3 | -63.0 | 20.0 | 0.111 | 0.061 |
B:Q9YHT2:0.061 |
FAD OAA HOH |
3.180 3.738 3.028 |
N CB NE2 |
O4 O5 O |
||
| GLN | E:61 | N:61 | 31.0 | 0.172 | -118.1 | -65.0 | NA | NA | NA | ||||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:61 | A:61 | 31.0 | 0.172 | -117.3 | -60.8 | 17.0 | 0.094 | 0.078 |
B:Q9YHT2:0.078 |
FAD OAA UNL HOH |
3.252 4.058 9.186 2.763 |
N C NE2 NE2 |
O4 O4 N1 O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:61 | A:61 | 35.0 | 0.194 | -119.5 | -54.1 | 18.0 | 0.1 | 0.094 |
B:Q9YHT2:0.094 |
FAD OAA UNL HOH |
3.333 4.012 6.736 2.412 |
N C NE2 NE2 |
O4 O4 N3 O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:61 | A:61 | 27.0 | 0.15 | -125.7 | -60.7 | 15.0 | 0.083 | 0.067 |
B:Q9YHT2:0.067 |
FAD Y3P UNL UNL HOH |
3.177 3.688 9.335 7.352 3.000 |
N CB NE2 NE2 NE2 |
O4 O2 N1 O O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | GLN | A:61 | A:61 | 31.0 | 0.172 | -122.1 | -57.1 | 17.0 | 0.094 | 0.078 |
B:Q9YHT2:0.078 |
FAD OAA HOH |
3.220 3.872 3.171 |
N C NE2 |
O4 O4 O |
||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:61 | A:61 | 32.0 | 0.178 | -124.5 | -54.8 | 16.0 | 0.089 | 0.089 |
B:Q9YHT2:0.089 |
FAD OAA UNL HOH |
3.334 4.225 3.015 2.594 |
N C NE2 NE2 |
O4 O4 O O |
||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:61 | A:61 | 31.0 | 0.172 | -123.7 | -50.4 | 19.0 | 0.106 | 0.066 |
B:Q9YHT2:0.067 |
FAD OAA UNL UNL HOH |
3.389 4.191 9.005 6.193 2.408 |
N C NE2 NE2 NE2 |
O4 O4 N1 O O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:61 | A:61 | 30.0 | 0.167 | -125.3 | -67.7 | 16.0 | 0.089 | 0.078 |
B:Q9YHT2:0.078 |
FAD OAA UNL UNL HOH |
3.114 3.640 9.431 6.570 2.903 |
N CB NE2 NE2 NE2 |
O4 O4 N1 O O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | GLN | A:104 | A:104 | 30.0 | 0.167 | -110.4 | -65.9 | ||