Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 225564 . G A CCDS3853.1:NM_004168.2:c.343Gag>Aag_NP_004159.2:p.115E>K Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 GLU A:83 A:115 96.0 0.505 S -110.8 -178.7 96.0 0.505 0.0
GLU C:83 C:115 50.0 0.263 S -134.3 170.3 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 GLU A:115 A:73 47.0 0.247 S -101.1 -158.6 47.0 0.247 0.0 HOH
 9.295
 N
 O
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 GLU A:115 A:73 52.0 0.274 S -148.3 -170.1 52.0 0.274 0.0
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 GLU A:73 A:73 51.0 0.268 S -151.4 -174.4 51.0 0.268 0.0 HOH
 4.329
 OE2
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 GLU A:73 A:73 50.0 0.263 S -155.6 -177.0 50.0 0.263 0.0
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:73 A:73 48.0 0.253 S -138.4 -171.3 48.0 0.253 0.0
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:73 A:73 43.0 0.226 S -123.0 165.9 43.0 0.226 0.0
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:73 A:73 47.0 0.247 S -98.5 -178.6 47.0 0.247 0.0
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:73 A:73 55.0 0.289 S -120.5 165.2 55.0 0.289 0.0
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:73 A:73 50.0 0.263 S -152.2 175.1 50.0 0.263 0.0
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:73 A:73 72.0 0.379 S -129.4 -86.4 72.0 0.379 0.0
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:73 A:73 40.0 0.211 S -108.5 175.0 40.0 0.211 0.0
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:73 A:73 42.0 0.221 S -115.7 166.1 42.0 0.221 0.0
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:73 A:73 55.0 0.289 S -137.5 174.8 55.0 0.289 0.0
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:73 A:73 53.0 0.279 S -124.8 155.7 53.0 0.279 0.0
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:73 A:73 50.0 0.263 S -116.9 -172.1 50.0 0.263 0.0
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:73 A:73 47.0 0.247 S -134.9 170.7 47.0 0.247 0.0
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:73 A:73 43.0 0.226 S -115.8 173.8 43.0 0.226 0.0
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:73 A:73 47.0 0.247 S -143.3 160.4 47.0 0.247 0.0
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:73 A:73 51.0 0.268 S -95.4 -173.2 51.0 0.268 0.0
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:73 A:73 48.0 0.253 S -129.7 -179.3 48.0 0.253 0.0
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:73 A:73 47.0 0.247 S -152.9 177.0 47.0 0.247 0.0
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLU A:73 A:73 41.0 0.216 S -105.4 -167.7 41.0 0.216 0.0 HOH
 3.140
 OE1
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLU A:73 A:73 46.0 0.242 S -126.5 -160.7 46.0 0.242 0.0 HOH
 6.352
 O
 O
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 GLU A:72 A:72 44.0 0.232 S -165.7 164.7 44.0 0.232 0.0 UNL
UNL
HOH
 4.185
6.911
2.643
 CG
C
OE2
 O1
O1
O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 GLU A:72 A:72 45.0 0.237 S -159.4 171.8 45.0 0.237 0.0 HOH
 2.371
 OE2
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 GLU A:72 A:72 51.0 0.268 S -156.3 177.6 51.0 0.268 0.0 UNL
UNL
UNL
UNL
UNL
UNL
HOH
 3.277
3.733
2.780
9.728
9.790
6.709
2.668
 CA
CG
OE2
N
N
CG
OE1
 C2
N1
O
O
O
O
O
GLU E:72 N:72 42.0 0.221 S -165.2 164.3 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLU A:72 A:72 48.0 0.253 S -161.3 168.4 48.0 0.253 0.0 HOH
 2.314
 OE2
 O
GLU E:72 N:72 48.0 0.253 S -160.5 169.3 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLU A:72 A:72 59.0 0.311 S -179.1 168.9 59.0 0.311 0.0 UNL
UNL
HOH
 5.591
7.354
3.123
 CG
C
N
 O1
O1
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 GLU A:72 A:72 49.0 0.258 S -157.9 169.6 49.0 0.258 0.0 HOH
 2.398
 OE2
 O
GLU E:72 N:72 45.0 0.237 S -159.5 169.2 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:72 A:72 46.0 0.242 S -175.9 169.7 46.0 0.242 0.0 UNL
HOH
 6.541
2.814
 O
OE1
 O
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:72 A:72 58.0 0.305 S -157.5 -176.0 58.0 0.305 0.0 HOH
 3.083
 OE2
 O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:72 A:72 44.0 0.232 S -149.5 176.5 44.0 0.232 0.0 UNL
HOH
 4.141
2.540
 CG
OE1
 O1
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 GLU A:72 A:72 48.0 0.253 S -147.4 167.5 48.0 0.253 0.0 HOH
 3.053
 OE2
 O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:72 A:72 49.0 0.258 S -149.1 172.9 49.0 0.258 0.0 HOH
 3.095
 N
 O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:72 A:72 49.0 0.258 S -165.8 171.9 49.0 0.258 0.0 UNL
UNL
HOH
 9.080
8.584
2.373
 O
OE1
OE2
 O
O
O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:72 A:72 46.0 0.242 S -161.5 164.6 46.0 0.242 0.0 UNL
UNL
HOH
 3.681
3.725
2.772
 CG
CA
OE1
 O1
O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 GLU A:115 A:115 52.0 0.274 S -149.7 169.9