Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 225577 . G A CCDS3853.1:NM_004168.2:c.356tGg>tAg_NP_004159.2:p.119W>* Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 TRP A:87 A:119 32.0 0.125 H -64.0 -20.5 32.0 0.125 0.0
TRP C:87 C:119 37.0 0.145 H -62.6 -24.6 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 TRP A:119 A:77 31.0 0.122 H -63.4 -27.5 31.0 0.122 0.0 HOH
 2.512
 N
 O
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 TRP A:119 A:77 28.0 0.11 H -64.9 -28.7 28.0 0.11 0.0
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 TRP A:77 A:77 32.0 0.125 H -55.2 -23.4 32.0 0.125 0.0 HOH
 2.859
 NE1
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 TRP A:77 A:77 32.0 0.125 H -48.7 -21.5 32.0 0.125 0.0
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:77 A:77 31.0 0.122 H -59.0 -29.9 31.0 0.122 0.0
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:77 A:77 34.0 0.133 H -63.3 -24.8 34.0 0.133 0.0
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:77 A:77 31.0 0.122 H -64.7 -22.9 31.0 0.122 0.0
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:77 A:77 34.0 0.133 H -65.6 -24.4 34.0 0.133 0.0
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:77 A:77 34.0 0.133 H -59.4 -24.4 34.0 0.133 0.0
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:77 A:77 32.0 0.125 H -61.5 -20.8 32.0 0.125 0.0
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:77 A:77 37.0 0.145 H -64.8 -18.3 37.0 0.145 0.0
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:77 A:77 34.0 0.133 H -64.9 -19.0 34.0 0.133 0.0
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:77 A:77 30.0 0.118 H -67.3 -21.5 30.0 0.118 0.0
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:77 A:77 35.0 0.137 H -68.0 -23.9 35.0 0.137 0.0
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:77 A:77 31.0 0.122 H -68.3 -20.4 31.0 0.122 0.0
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:77 A:77 35.0 0.137 H -66.0 -26.2 35.0 0.137 0.0
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:77 A:77 28.0 0.11 H -66.8 -22.0 28.0 0.11 0.0
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:77 A:77 33.0 0.129 H -63.1 -22.1 33.0 0.129 0.0
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:77 A:77 30.0 0.118 H -54.6 -24.4 30.0 0.118 0.0
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:77 A:77 31.0 0.122 H -61.7 -30.8 31.0 0.122 0.0
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:77 A:77 36.0 0.141 H -66.5 -23.4 36.0 0.141 0.0
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 TRP A:77 A:77 30.0 0.118 H -62.6 -20.6 30.0 0.118 0.0 HOH
 2.796
 N
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 TRP A:77 A:77 30.0 0.118 H -56.9 -25.1 30.0 0.118 0.0 HOH
 7.056
 CZ2
 O
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 TRP A:76 A:76 31.0 0.122 H -66.0 -25.5 31.0 0.122 0.0 UNL
HOH
 9.661
2.756
 N
N
 O1
O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 TRP A:76 A:76 30.0 0.118 H -55.1 -28.6 30.0 0.118 0.0 HOH
 3.045
 N
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 TRP A:76 A:76 31.0 0.122 H -63.0 -25.1 31.0 0.122 0.0 UNL
UNL
UNL
HOH
 9.717
8.336
6.767
2.936
 CZ3
CH2
CH2
N
 O
O
O
O
TRP E:76 N:76 30.0 0.118 H -63.1 -27.5 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 TRP A:76 A:76 30.0 0.118 H -62.8 -25.3 30.0 0.118 0.0 UNL
HOH
 7.288
3.122
 CH2
N
 O1
O
TRP E:76 N:76 30.0 0.118 H -64.1 -24.6 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 TRP A:76 A:76 35.0 0.137 H -57.3 -18.6 35.0 0.137 0.0 UNL
UNL
HOH
 9.770
7.772
3.266
 N
CZ3
NE1
 O1
O1
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 TRP A:76 A:76 30.0 0.118 H -61.5 -26.4 30.0 0.118 0.0 UNL
UNL
HOH
 7.641
9.834
2.899
 CZ2
CD1
N
 C2
C2
O
TRP E:76 N:76 30.0 0.118 H -62.2 -26.9 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 TRP A:76 A:76 31.0 0.122 H -58.9 -21.2 31.0 0.122 0.0 UNL
UNL
HOH
 9.921
3.572
3.577
 C
CZ2
CB
 O3
O
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 TRP A:76 A:76 32.0 0.125 H -64.0 -22.5 32.0 0.125 0.0 UNL
HOH
 9.213
3.547
 CH2
CB
 O
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 TRP A:76 A:76 32.0 0.125 H -57.7 -23.6 32.0 0.125 0.0 UNL
UNL
HOH
 9.884
8.658
2.720
 CZ3
N
N
 O3
O2
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 TRP A:76 A:76 30.0 0.118 H -61.1 -22.2 30.0 0.118 0.0 UNL
HOH
 3.637
3.584
 NE1
CB
 O
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 TRP A:76 A:76 31.0 0.122 H -60.2 -23.5 31.0 0.122 0.0 UNL
UNL
HOH
 9.946
4.498
2.794
 C
CZ2
N
 O3
O
O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 TRP A:76 A:76 31.0 0.122 H -63.2 -23.0 31.0 0.122 0.0 UNL
UNL
HOH
 8.736
2.717
3.611
 N
N
CB
 O2
O
O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 TRP A:76 A:76 31.0 0.122 H -60.4 -26.4 31.0 0.122 0.0 UNL
UNL
HOH
 9.949
8.186
2.810
 CZ3
N
N
 O3
O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 TRP A:119 A:119 32.0 0.125 H -59.1 -26.4