Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 225583 . G A CCDS3853.1:NM_004168.2:c.362tGg>tAg_NP_004159.2:p.121W>* Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 TRP A:89 A:121 46.0 0.18 H -74.1 -37.6 46.0 0.18 0.0
TRP C:89 C:121 40.0 0.157 H -74.0 -40.0 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 TRP A:121 A:79 33.0 0.129 H -68.2 -34.5 33.0 0.129 0.0 HOH
 6.556
 N
 O
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 TRP A:121 A:79 20.0 0.078 H -72.3 -36.0 20.0 0.078 0.0
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 TRP A:79 A:79 21.0 0.082 H -72.6 -29.7 21.0 0.082 0.0 HOH
 3.241
 O
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 TRP A:79 A:79 22.0 0.086 H -74.7 -28.4 22.0 0.086 0.0
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:79 A:79 41.0 0.161 H -72.1 -39.3 41.0 0.161 0.0
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:79 A:79 28.0 0.11 H -70.2 -38.4 28.0 0.11 0.0
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:79 A:79 27.0 0.106 H -68.4 -36.3 27.0 0.106 0.0
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:79 A:79 49.0 0.192 H -72.7 -31.1 49.0 0.192 0.0
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:79 A:79 26.0 0.102 H -74.0 -39.6 26.0 0.102 0.0
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:79 A:79 41.0 0.161 H -80.1 -35.2 41.0 0.161 0.0
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:79 A:79 24.0 0.094 H -70.2 -28.4 24.0 0.094 0.0
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:79 A:79 29.0 0.114 H -75.5 -30.7 29.0 0.114 0.0
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:79 A:79 22.0 0.086 H -75.3 -33.3 22.0 0.086 0.0
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:79 A:79 34.0 0.133 H -73.1 -37.3 34.0 0.133 0.0
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:79 A:79 41.0 0.161 H -73.2 -31.9 41.0 0.161 0.0
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:79 A:79 38.0 0.149 H -67.6 -32.8 38.0 0.149 0.0
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:79 A:79 25.0 0.098 H -73.1 -29.5 25.0 0.098 0.0
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:79 A:79 36.0 0.141 H -63.8 -36.2 36.0 0.141 0.0
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:79 A:79 39.0 0.153 H -73.7 -36.6 39.0 0.153 0.0
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:79 A:79 30.0 0.118 H -67.4 -41.8 30.0 0.118 0.0
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 TRP A:79 A:79 25.0 0.098 H -68.4 -38.7 25.0 0.098 0.0
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 TRP A:79 A:79 22.0 0.086 H -72.4 -40.8 22.0 0.086 0.0 HOH
 2.790
 O
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 TRP A:79 A:79 37.0 0.145 H -77.8 -32.9 37.0 0.145 0.0
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 TRP A:78 A:78 27.0 0.106 H -65.8 -35.3 27.0 0.106 0.0 UNL
UNL
HOH
 4.161
3.574
2.960
 CZ3
CH2
O
 O1
O1
O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 TRP A:78 A:78 30.0 0.118 H -68.5 -33.6 30.0 0.118 0.0 HOH
 2.753
 O
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 TRP A:78 A:78 27.0 0.106 H -66.6 -40.2 27.0 0.106 0.0 UNL
UNL
UNL
UNL
UNL
UNL
UNL
UNL
HOH
 8.650
4.008
8.325
9.811
7.817
7.428
7.255
6.263
3.145
 O
CH2
CZ3
O
CD1
CD1
NE1
CH2
O
 O6
N3
O
O
O
O
O
O
O
TRP E:78 N:78 27.0 0.106 H -70.8 -38.1 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 TRP A:78 A:78 26.0 0.102 H -76.0 -34.8 26.0 0.102 0.0 HOH
 3.033
 O
 O
TRP E:78 N:78 26.0 0.102 H -75.5 -33.6 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 TRP A:78 A:78 35.0 0.137 H -70.4 -33.5 35.0 0.137 0.0 UNL
UNL
UNL
HOH
 4.442
3.316
6.571
2.834
 CZ3
CH2
N
NE1
 O1
O1
O1
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 TRP A:78 A:78 27.0 0.106 H -74.3 -36.4 27.0 0.106 0.0 UNL
UNL
HOH
 7.516
8.769
3.165
 CD1
CZ2
O
 O4
C2
O
TRP E:78 N:78 27.0 0.106 H -75.9 -35.3 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 TRP A:78 A:78 24.0 0.094 H -69.3 -40.5 24.0 0.094 0.0 UNL
HOH
 7.394
3.007
 CD1
O
 O3
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 TRP A:78 A:78 28.0 0.11 H -65.7 -43.7 28.0 0.11 0.0 UNL
UNL
HOH
 7.541
8.960
3.157
 CD1
O
NE1
 O3
O
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 TRP A:78 A:78 25.0 0.098 H -68.2 -36.3 25.0 0.098 0.0 UNL
UNL
UNL
HOH
 7.429
4.075
2.918
2.788
 CD1
CH2
NE1
O
 O3
O2
O2
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 TRP A:78 A:78 25.0 0.098 H -61.9 -39.0 25.0 0.098 0.0 UNL
HOH
 7.486
2.906
 NE1
NE1
 C3
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 TRP A:78 A:78 24.0 0.094 H -65.1 -42.7 24.0 0.094 0.0 UNL
HOH
 7.267
3.405
 CD1
NE1
 O3
O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 TRP A:78 A:78 27.0 0.106 H -70.8 -39.7 27.0 0.106 0.0 UNL
UNL
UNL
HOH
 7.422
2.962
6.839
6.743
 CD1
NE1
N
N
 O2
O2
O
O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 TRP A:78 A:78 26.0 0.102 H -63.7 -38.8 26.0 0.102 0.0 UNL
UNL
UNL
HOH
 7.727
3.809
2.968
3.050
 CD1
CZ3
NE1
O
 O3
O2
O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 TRP A:121 A:121 25.0 0.098 H -75.1 -39.7