Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 225593 | . | C | A | CCDS3853.1:NM_004168.2:c.372taC>taA_NP_004159.2:p.124Y>* | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | TYR | A:92 | A:124 | 48.0 | 0.209 | H | -63.5 | -41.8 | 48.0 | 0.209 | 0.0 |
HOH |
9.118 |
O |
O |
||
| TYR | C:92 | C:124 | 49.0 | 0.213 | H | -61.3 | -40.3 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | TYR | A:124 | A:82 | 50.0 | 0.217 | H | -52.0 | -48.0 | 50.0 | 0.217 | 0.0 | ||||||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | TYR | A:124 | A:82 | 49.0 | 0.213 | H | -47.3 | -49.5 | 49.0 | 0.213 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | TYR | A:82 | A:82 | 49.0 | 0.213 | H | -53.4 | -55.5 | 49.0 | 0.213 | 0.0 |
HOH |
3.966 |
CE2 |
O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | TYR | A:82 | A:82 | 46.0 | 0.2 | H | -52.1 | -55.5 | 46.0 | 0.2 | 0.0 | ||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:82 | A:82 | 44.0 | 0.191 | H | -52.5 | -43.4 | 44.0 | 0.191 | 0.0 | ||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:82 | A:82 | 51.0 | 0.222 | H | -56.3 | -42.6 | 51.0 | 0.222 | 0.0 | ||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:82 | A:82 | 46.0 | 0.2 | H | -49.3 | -47.1 | 46.0 | 0.2 | 0.0 | ||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:82 | A:82 | 44.0 | 0.191 | H | -59.4 | -43.6 | 44.0 | 0.191 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:82 | A:82 | 45.0 | 0.196 | H | -50.3 | -51.6 | 45.0 | 0.196 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:82 | A:82 | 43.0 | 0.187 | H | -56.3 | -38.7 | 43.0 | 0.187 | 0.0 | ||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:82 | A:82 | 43.0 | 0.187 | H | -58.1 | -45.5 | 43.0 | 0.187 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:82 | A:82 | 45.0 | 0.196 | H | -67.7 | -39.0 | 45.0 | 0.196 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:82 | A:82 | 50.0 | 0.217 | H | -61.4 | -40.8 | 50.0 | 0.217 | 0.0 | ||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:82 | A:82 | 46.0 | 0.2 | H | -60.1 | -41.8 | 46.0 | 0.2 | 0.0 | ||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:82 | A:82 | 44.0 | 0.191 | H | -60.6 | -42.6 | 44.0 | 0.191 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:82 | A:82 | 49.0 | 0.213 | H | -55.3 | -43.7 | 49.0 | 0.213 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:82 | A:82 | 44.0 | 0.191 | H | -61.0 | -44.5 | 44.0 | 0.191 | 0.0 | ||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:82 | A:82 | 42.0 | 0.183 | H | -58.5 | -42.4 | 42.0 | 0.183 | 0.0 | ||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:82 | A:82 | 42.0 | 0.183 | H | -54.0 | -50.7 | 42.0 | 0.183 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:82 | A:82 | 51.0 | 0.222 | H | -55.3 | -48.7 | 51.0 | 0.222 | 0.0 | ||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:82 | A:82 | 51.0 | 0.222 | H | -62.9 | -44.8 | 51.0 | 0.222 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | TYR | A:82 | A:82 | 44.0 | 0.191 | H | -50.5 | -45.5 | 44.0 | 0.191 | 0.0 |
HOH |
4.026 |
CD2 |
O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | TYR | A:82 | A:82 | 49.0 | 0.213 | H | -52.9 | -50.8 | 49.0 | 0.213 | 0.0 |
HOH |
7.791 |
OH |
O |
||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | TYR | A:81 | A:81 | 46.0 | 0.2 | H | -61.2 | -45.5 | 46.0 | 0.2 | 0.0 |
UNL HOH |
9.430 2.665 |
OH OH |
O1 O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | TYR | A:81 | A:81 | 48.0 | 0.209 | H | -65.2 | -44.8 | 48.0 | 0.209 | 0.0 |
HOH |
2.835 |
OH |
O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | TYR | A:81 | A:81 | 48.0 | 0.209 | H | -56.3 | -48.3 | 48.0 | 0.209 | 0.0 |
UNL UNL UNL UNL UNL HOH |
5.734 2.795 5.072 6.858 8.433 2.706 |
CE2 OH CD1 CD1 CB OH |
O6 O O O O O |
||
| TYR | E:81 | N:81 | 50.0 | 0.217 | H | -56.0 | -47.4 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | TYR | A:81 | A:81 | 48.0 | 0.209 | H | -60.5 | -47.2 | 48.0 | 0.209 | 0.0 |
HOH |
2.447 |
OH |
O |
||
| TYR | E:81 | N:81 | 47.0 | 0.204 | H | -62.1 | -47.1 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | TYR | A:81 | A:81 | 48.0 | 0.209 | H | -48.6 | -51.2 | 48.0 | 0.209 | 0.0 |
UNL UNL HOH |
9.059 4.950 3.073 |
OH CB OH |
O1 O1 O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | TYR | A:81 | A:81 | 47.0 | 0.204 | H | -58.8 | -45.2 | 47.0 | 0.204 | 0.0 |
UNL HOH |
3.952 2.507 |
CD1 OH |
O4 O |
||
| TYR | E:81 | N:81 | 48.0 | 0.209 | H | -60.2 | -44.6 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | TYR | A:81 | A:81 | 38.0 | 0.165 | H | -62.8 | -44.7 | 38.0 | 0.165 | 0.0 |
UNL HOH |
4.085 2.797 |
CD1 OH |
O2 O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | TYR | A:81 | A:81 | 53.0 | 0.23 | H | -63.7 | -40.7 | 53.0 | 0.23 | 0.0 |
UNL UNL HOH |
4.438 5.536 2.725 |
CD1 CE2 OH |
O2 C O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | TYR | A:81 | A:81 | 50.0 | 0.217 | H | -62.2 | -47.2 | 50.0 | 0.217 | 0.0 |
UNL UNL HOH |
4.115 9.251 2.735 |
CD1 CB OH |
O2 O2 O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | TYR | A:81 | A:81 | 54.0 | 0.235 | H | -58.0 | -48.5 | 54.0 | 0.235 | 0.0 |
UNL HOH |
4.205 4.934 |
CD1 CE1 |
O1 O |
||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | TYR | A:81 | A:81 | 51.0 | 0.222 | H | -64.0 | -45.7 | 51.0 | 0.222 | 0.0 |
UNL HOH |
4.151 4.329 |
CD1 CE1 |
O2 O |
||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | TYR | A:81 | A:81 | 43.0 | 0.187 | H | -61.5 | -42.2 | 43.0 | 0.187 | 0.0 |
UNL UNL HOH |
4.304 9.197 3.358 |
CD2 CB OH |
O2 O2 O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | TYR | A:81 | A:81 | 46.0 | 0.2 | H | -61.3 | -46.8 | 46.0 | 0.2 | 0.0 |
UNL UNL HOH |
3.971 8.996 2.878 |
CD1 CB OH |
O2 O2 O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | TYR | A:124 | A:124 | 51.0 | 0.222 | H | -57.2 | -47.5 | |