Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 225654 . C A CCDS3853.1:NM_004168.2:c.433Cag>Aag_NP_004159.2:p.145Q>K Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 GLN A:113 A:145 50.0 0.278 T -80.1 -1.2 50.0 0.278 0.0 HOH
 8.686
 CG
 O
GLN C:113 C:145 47.0 0.261 H -79.9 -2.8 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 GLN A:145 A:103 30.0 0.167 H -59.4 -27.4 30.0 0.167 0.0 HOH
 5.112
 NE2
 O
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 GLN A:145 A:103 36.0 0.2 H -73.0 -0.3 36.0 0.2 0.0
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 GLN A:103 A:103 31.0 0.172 H -84.5 -20.6 31.0 0.172 0.0 HOH
 2.440
 OE1
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 GLN A:103 A:103 31.0 0.172 H -87.2 -21.6 31.0 0.172 0.0
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:103 A:103 33.0 0.183 H -74.7 -18.3 33.0 0.183 0.0
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:103 A:103 35.0 0.194 H -67.4 -23.9 35.0 0.194 0.0
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:103 A:103 32.0 0.178 H -71.4 -23.7 32.0 0.178 0.0
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:103 A:103 36.0 0.2 H -76.7 -19.2 36.0 0.2 0.0
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:103 A:103 30.0 0.167 H -82.6 -20.0 30.0 0.167 0.0
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:103 A:103 26.0 0.144 H -74.1 -10.5 26.0 0.144 0.0
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:103 A:103 38.0 0.211 H -77.4 -7.0 38.0 0.211 0.0
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:103 A:103 38.0 0.211 S -83.7 -1.5 38.0 0.211 0.0
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:103 A:103 24.0 0.133 T -99.2 24.6 24.0 0.133 0.0
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:103 A:103 42.0 0.233 S -87.0 4.0 42.0 0.233 0.0
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:103 A:103 33.0 0.183 H -82.1 -11.8 33.0 0.183 0.0
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:103 A:103 38.0 0.211 H -74.2 -21.1 38.0 0.211 0.0
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:103 A:103 37.0 0.206 H -84.3 -9.3 37.0 0.206 0.0
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:103 A:103 38.0 0.211 H -79.1 -12.6 38.0 0.211 0.0
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:103 A:103 29.0 0.161 H -82.8 -4.9 29.0 0.161 0.0
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:103 A:103 39.0 0.217 H -69.4 -28.6 39.0 0.217 0.0
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:103 A:103 36.0 0.2 H -98.6 -9.9 36.0 0.2 0.0
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLN A:103 A:103 32.0 0.178 H -76.6 -14.0 32.0 0.178 0.0 HOH
 4.318
 NE2
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLN A:103 A:103 37.0 0.206 H -71.5 -11.4 37.0 0.206 0.0 HOH
 7.812
 OE1
 O
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 GLN A:102 A:102 67.0 0.372 S -77.4 -9.0 67.0 0.372 0.0 HOH
 2.668
 NE2
 O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 GLN A:102 A:102 67.0 0.372 H -78.1 -22.0 67.0 0.372 0.0 HOH
 3.100
 NE2
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 GLN A:102 A:102 53.0 0.294 H -81.3 -9.0 53.0 0.294 0.0 UNL
UNL
UNL
UNL
HOH
 7.064
3.747
9.814
5.753
2.580
 NE2
NE2
OE1
NE2
NE2
 O2
O2
O
O
O
GLN E:102 N:102 53.0 0.294 H -82.3 -6.7 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLN A:102 A:102 54.0 0.3 H -80.4 -9.2 54.0 0.3 0.0 UNL
HOH
 5.747
2.733
 NE2
OE1
 O1
O
GLN E:102 N:102 53.0 0.294 H -78.6 -9.8 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLN A:102 A:102 70.0 0.389 H -91.6 -16.1 70.0 0.389 0.0 HOH
 2.974
 NE2
 O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 GLN A:102 A:102 51.0 0.283 H -79.8 -12.6 51.0 0.283 0.0 UNL
HOH
 9.818
2.720
 NE2
NE2
 C2
O
GLN E:102 N:102 52.0 0.289 H -79.6 -12.4 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:102 A:102 49.0 0.272 H -73.2 -12.2 49.0 0.272 0.0 UNL
UNL
UNL
HOH
 8.019
9.049
7.463
3.068
 CD
OE1
NE2
OE1
 O1
O
O
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:102 A:102 54.0 0.3 H -79.0 -7.6 54.0 0.3 0.0 BCT
UNL
HOH
 7.058
3.852
2.888
 NE2
NE2
NE2
 O3
O
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:102 A:102 51.0 0.283 H -75.6 -12.2 51.0 0.283 0.0 UNL
HOH
 9.311
2.982
 OE1
NE2
 O
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 GLN A:102 A:102 67.0 0.372 H -77.3 -11.8 67.0 0.372 0.0 UNL
UNL
HOH
 7.533
8.136
3.162
 NE2
NE2
NE2
 O2
O
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:102 A:102 71.0 0.394 H -82.8 -3.2 71.0 0.394 0.0 UNL
UNL
HOH
 7.041
8.136
2.790
 NE2
NE2
NE2
 O
O
O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:102 A:102 53.0 0.294 H -79.4 -5.3 53.0 0.294 0.0 UNL
HOH
 8.902
6.069
 N
C
 O
O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:102 A:102 50.0 0.278 H -75.6 -12.4 50.0 0.278 0.0 UNL
UNL
HOH
 8.181
9.026
2.821
 NE2
OE1
NE2
 C
O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 GLN A:145 A:145 50.0 0.278 H -77.8 -11.9