Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 225675 . G A CCDS3853.1:NM_004168.2:c.454Gag>Aag_NP_004159.2:p.152E>K Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 GLU A:120 A:152 45.0 0.237 H -67.1 -38.5 45.0 0.237 0.0 HOH
 6.707
 OE2
 O
GLU C:120 C:152 45.0 0.237 H -64.0 -37.7 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 GLU A:152 A:110 35.0 0.184 H -53.9 -41.1 22.0 0.116 0.068 B:Q007T0:0.068
 HOH
 3.523
 CB
 O
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 GLU A:152 A:110 32.0 0.168 H -61.7 -39.0 17.0 0.089 0.079 B:Q007T0:0.079
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 GLU A:110 A:110 34.0 0.179 H -64.5 -40.9 21.0 0.111 0.068 B:Q007T0:0.068
 HOH
 2.367
 N
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 GLU A:110 A:110 36.0 0.189 H -64.3 -40.6 23.0 0.121 0.068 B:None:0.068
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:110 A:110 37.0 0.195 H -52.0 -41.9 24.0 0.126 0.069 B:Q007T0:0.068
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:110 A:110 37.0 0.195 H -54.5 -45.6 24.0 0.126 0.069 B:Q007T0:0.068
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:110 A:110 36.0 0.189 H -49.0 -45.2 22.0 0.116 0.073 B:Q007T0:0.074
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:110 A:110 42.0 0.221 H -53.7 -43.9 28.0 0.147 0.074 B:Q007T0:0.074
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:110 A:110 36.0 0.189 H -59.8 -42.3 22.0 0.116 0.073 B:Q007T0:0.074
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:110 A:110 36.0 0.189 H -61.0 -41.4 22.0 0.116 0.073 B:Q007T0:0.074
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:110 A:110 40.0 0.211 H -53.7 -50.9 25.0 0.132 0.079 B:Q007T0:0.079
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:110 A:110 35.0 0.184 H -62.8 -47.3 20.0 0.105 0.079 B:Q007T0:0.079
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:110 A:110 34.0 0.179 H -53.1 -43.3 21.0 0.111 0.068 B:Q007T0:0.068
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:110 A:110 37.0 0.195 H -63.7 -39.3 23.0 0.121 0.074 B:Q007T0:0.074
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:110 A:110 35.0 0.184 H -59.7 -41.4 20.0 0.105 0.079 B:Q007T0:0.079
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:110 A:110 38.0 0.2 H -54.6 -49.7 26.0 0.137 0.063 B:Q007T0:0.063
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:110 A:110 41.0 0.216 H -62.6 -47.0 23.0 0.121 0.095 B:Q007T0:0.095
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:110 A:110 42.0 0.221 H -63.6 -44.6 25.0 0.132 0.089 B:Q007T0:0.089
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:110 A:110 34.0 0.179 H -62.7 -36.9 20.0 0.105 0.074 B:Q007T0:0.074
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:110 A:110 37.0 0.195 H -62.0 -38.2 25.0 0.132 0.063 B:Q007T0:0.063
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLU A:110 A:110 38.0 0.2 H -59.4 -40.5 19.0 0.1 0.1 B:Q007T0:0.1
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLU A:110 A:110 35.0 0.184 H -62.1 -45.3 22.0 0.116 0.068 B:Q007T0:0.068
 HOH
 2.950
 OE2
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLU A:110 A:110 38.0 0.2 H -54.4 -44.4 27.0 0.142 0.058 B:Q007T0:0.058
 HOH
 7.171
 N
 O
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 GLU A:109 A:109 39.0 0.205 H -58.9 -45.4 30.0 0.158 0.047 B:Q9YHT2:0.047
 HOH
 2.464
 OE1
 O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 GLU A:109 A:109 37.0 0.195 H -66.7 -36.4 28.0 0.147 0.048 B:3851612:0.047
 HOH
 2.580
 OE2
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 GLU A:109 A:109 44.0 0.232 H -51.3 -51.2 26.0 0.137 0.095 B:Q9YHT2:0.095
 UNL
UNL
UNL
HOH
 9.392
2.336
8.702
2.562
 OE2
OE2
N
OE1
 O3
O
O
O
GLU E:109 N:109 41.0 0.216 H -53.6 -50.4 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLU A:109 A:109 41.0 0.216 H -58.5 -43.6 29.0 0.153 0.063 B:Q9YHT2:0.063
 HOH
 2.554
 OE1
 O
GLU E:109 N:109 45.0 0.237 H -55.8 -43.7 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLU A:109 A:109 42.0 0.221 H -58.8 -40.7 35.0 0.184 0.037 B:Q9YHT2:0.037
 HOH
 2.610
 OE1
 O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 GLU A:109 A:109 41.0 0.216 H -54.3 -48.3 26.0 0.137 0.079 B:Q9YHT2:0.079
 HOH
 2.618
 OE1
 O
GLU E:109 N:109 44.0 0.232 H -54.1 -48.0 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:109 A:109 39.0 0.205 H -54.1 -44.8 27.0 0.142 0.063 B:Q9YHT2:0.063
 UNL
UNL
UNL
HOH
 6.499
4.781
8.594
2.720
 OE2
OE2
N
OE1
 O
O
O
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:109 A:109 42.0 0.221 H -63.5 -36.9 26.0 0.137 0.084 B:Q9YHT2:0.084
 UNL
UNL
HOH
 5.571
9.696
2.468
 OE2
OE2
OE1
 N1
C
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:109 A:109 38.0 0.2 H -55.4 -39.8 29.0 0.153 0.047 B:Q9YHT2:0.047
 UNL
UNL
HOH
 5.042
7.071
2.430
 OE2
O
OE1
 O
O
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 GLU A:109 A:109 42.0 0.221 H -55.5 -45.9 25.0 0.132 0.089 B:Q9YHT2:0.089
 UNL
HOH
 6.908
2.840
 O
OE1
 N2
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:109 A:109 42.0 0.221 H -62.4 -46.7 27.0 0.142 0.079 B:Q9YHT2:0.079
 UNL
HOH
 6.986
3.505
 OE2
OE1
 O
O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:109 A:109 37.0 0.195 H -63.4 -40.4 24.0 0.126 0.069 B:Q9YHT2:0.068
 HOH
 2.570
 OE1
 O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLU A:109 A:109 39.0 0.205 H -55.1 -39.8 27.0 0.142 0.063 B:Q9YHT2:0.063
 UNL
UNL
HOH
 4.849
7.035
2.553
 OE2
O
OE1
 O
O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 GLU A:152 A:152 32.0 0.168 H -58.9 -45.4