Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 226025 . A C CCDS3853.1:NM_004168.2:c.484Aga>Cga_NP_004159.2:p.162R>R Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 ARG A:130 A:162 142.0 0.631 B -102.5 173.8 142.0 0.631 0.0
ARG C:130 C:162 150.0 0.667 B -111.7 167.8 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 ARG A:162 A:120 102.0 0.453 B -117.5 170.4 6.0 0.027 0.426 B:Q007T0:0.427
 HOH
 4.649
 O
 O
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 ARG A:162 A:120 104.0 0.462 B -118.5 161.9 7.0 0.031 0.431 B:Q007T0:0.431
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 ARG A:120 A:120 106.0 0.471 B -103.9 163.5 11.0 0.049 0.422 B:Q007T0:0.422
 HOH
 2.883
 NH2
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 ARG A:120 A:120 110.0 0.489 B -106.3 164.4 10.0 0.044 0.445 B:None:0.444
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:120 A:120 105.0 0.467 B -113.0 168.6 5.0 0.022 0.445 B:Q007T0:0.444
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:120 A:120 107.0 0.476 B -129.3 148.8 9.0 0.04 0.436 B:Q007T0:0.436
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:120 A:120 107.0 0.476 B -119.6 163.5 7.0 0.031 0.445 B:Q007T0:0.444
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:120 A:120 108.0 0.48 B -119.4 153.1 3.0 0.013 0.467 B:Q007T0:0.467
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:120 A:120 105.0 0.467 B -121.1 153.8 9.0 0.04 0.427 B:Q007T0:0.427
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:120 A:120 102.0 0.453 B -117.3 160.9 6.0 0.027 0.426 B:Q007T0:0.427
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:120 A:120 104.0 0.462 B -120.7 153.8 6.0 0.027 0.435 B:Q007T0:0.436
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:120 A:120 105.0 0.467 B -121.8 159.5 5.0 0.022 0.445 B:Q007T0:0.444
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:120 A:120 99.0 0.44 B -122.0 169.8 3.0 0.013 0.427 B:Q007T0:0.427
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:120 A:120 100.0 0.444 B -127.9 154.2 4.0 0.018 0.426 B:Q007T0:0.427
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:120 A:120 103.0 0.458 B -113.9 165.1 3.0 0.013 0.445 B:Q007T0:0.444
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:120 A:120 99.0 0.44 B -117.9 170.0 5.0 0.022 0.418 B:Q007T0:0.418
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:120 A:120 98.0 0.436 B -127.3 162.1 5.0 0.022 0.414 B:Q007T0:0.413
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:120 A:120 101.0 0.449 B -120.8 174.3 5.0 0.022 0.427 B:Q007T0:0.427
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:120 A:120 103.0 0.458 B -121.5 162.6 5.0 0.022 0.436 B:Q007T0:0.436
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:120 A:120 110.0 0.489 B -122.7 164.3 7.0 0.031 0.458 B:Q007T0:0.458
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:120 A:120 99.0 0.44 B -117.7 172.4 4.0 0.018 0.422 B:Q007T0:0.422
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 ARG A:120 A:120 105.0 0.467 B -113.3 157.0 9.0 0.04 0.427 B:Q007T0:0.427
 HOH
 3.009
 NH2
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 ARG A:120 A:120 105.0 0.467 B -126.3 148.3 9.0 0.04 0.427 B:Q007T0:0.427
 HOH
 2.859
 NH2
 O
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 ARG A:119 A:119 103.0 0.458 B -124.9 154.2 6.0 0.027 0.431 B:Q9YHT2:0.431
 UNL
HOH
 7.299
2.768
 O
N
 O1
O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 ARG A:119 A:119 100.0 0.444 B -116.6 153.6 6.0 0.027 0.417 B:3851612:0.418
 HOH
 2.786
 N
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 ARG A:119 A:119 104.0 0.462 B -124.3 151.3 7.0 0.031 0.431 B:Q9YHT2:0.431
 UNL
UNL
UNL
UNL
UNL
UNL
HOH
 7.106
5.343
9.922
3.099
8.789
8.932
2.758
 CB
O
O
N
NH1
NH1
O
 N1
O
O
O
O
O
O
ARG E:119 N:119 106.0 0.471 B -125.5 149.1 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ARG A:119 A:119 105.0 0.467 B -123.5 155.2 7.0 0.031 0.436 B:Q9YHT2:0.436
 HOH
 2.590
 O
 O
ARG E:119 N:119 107.0 0.476 B -125.5 156.2 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ARG A:119 A:119 106.0 0.471 B -104.1 160.5 8.0 0.036 0.435 B:Q9YHT2:0.436
 UNL
HOH
 7.763
2.897
 O
NE
 O1
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 ARG A:119 A:119 103.0 0.458 B -119.5 155.8 6.0 0.027 0.431 B:Q9YHT2:0.431
 HOH
 2.554
 O
 O
ARG E:119 N:119 107.0 0.476 B -121.5 154.7 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:119 A:119 102.0 0.453 B -125.3 153.0 6.0 0.027 0.426 B:Q9YHT2:0.427
 UNL
UNL
UNL
UNL
HOH
 9.218
8.006
8.689
9.138
2.817
 NH1
NH1
NH1
NH1
NH2
 O
O
O
O
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:119 A:119 106.0 0.471 B -122.9 156.9 7.0 0.031 0.44 B:Q9YHT2:0.44
 UNL
UNL
UNL
HOH
 3.333
8.448
7.720
2.700
 N
NH1
NH2
O
 N1
N1
N1
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:119 A:119 99.0 0.44 B -125.6 159.2 7.0 0.031 0.409 B:Q9YHT2:0.409
 HOH
 2.813
 O
 O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 ARG A:119 A:119 104.0 0.462 B -129.4 152.3 6.0 0.027 0.435 B:Q9YHT2:0.436
 HOH
 2.735
 O
 O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:119 A:119 101.0 0.449 B -120.3 154.0 5.0 0.022 0.427 B:Q9YHT2:0.427
 HOH
 2.779
 O
 O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:119 A:119 107.0 0.476 B -114.3 153.3 6.0 0.027 0.449 B:Q9YHT2:0.449
 UNL
HOH
 8.466
2.888
 CG
O
 O
O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:119 A:119 100.0 0.444 B -131.6 152.2 6.0 0.027 0.417 B:Q9YHT2:0.418
 UNL
HOH
 6.780
2.916
 CB
O
 N3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 ARG A:162 A:162 104.0 0.462 B -115.2 150.3