Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 226067 . C A CCDS3853.1:NM_004168.2:c.526Cag>Aag_NP_004159.2:p.176Q>K Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 GLN A:144 A:176 14.0 0.078 -100.5 133.1 14.0 0.078 0.0 FAD
OAA
HOH
 9.605
9.505
6.991
 NE2
NE2
NE2
 O2
O5
O
GLN C:144 C:176 5.0 0.028 -93.1 130.8 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 GLN A:176 A:134 3.0 0.017 E -112.9 146.7 3.0 0.017 0.0 FAD
 9.457
 NE2
 O2
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 GLN A:176 A:134 6.0 0.033 E -133.8 124.0 6.0 0.033 0.0 FAD
 9.902
 NE2
 O2
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 GLN A:134 A:134 3.0 0.017 E -138.6 116.4 3.0 0.017 0.0 FAD
HOH
 8.901
3.174
 NE2
N
 O2
O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 GLN A:134 A:134 5.0 0.028 E -136.2 114.3 5.0 0.028 0.0 FAD
3NP
 8.675
9.063
 NE2
NE2
 O2
C2
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:134 A:134 6.0 0.033 E -107.2 151.0 6.0 0.033 0.0 FAD
MLI
 9.629
9.868
 OE1
NE2
 O2
O8
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:134 A:134 3.0 0.017 -104.8 142.1 3.0 0.017 0.0 FAD
MLI
 9.720
9.385
 OE1
NE2
 O2
O7
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:134 A:134 4.0 0.022 E -104.3 148.5 4.0 0.022 0.0 FAD
MLI
 9.499
9.785
 OE1
NE2
 O2
C1
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:134 A:134 4.0 0.022 E -101.4 141.1 4.0 0.022 0.0 FAD
 9.826
 NE2
 O2
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:134 A:134 3.0 0.017 E -117.4 133.0 3.0 0.017 0.0 FAD
MLI
 9.575
9.161
 NE2
NE2
 O2
C1
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:134 A:134 2.0 0.011 -127.1 131.4 2.0 0.011 0.0 FAD
MLI
 9.443
8.385
 NE2
NE2
 O2
O9
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:134 A:134 3.0 0.017 E -106.1 147.3 3.0 0.017 0.0 FAD
 9.896
 NE2
 O2
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:134 A:134 3.0 0.017 E -123.0 139.5 3.0 0.017 0.0 FAD
 9.611
 NE2
 O2
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:134 A:134 5.0 0.028 E -104.9 135.7 5.0 0.028 0.0
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:134 A:134 5.0 0.028 E -95.9 147.6 5.0 0.028 0.0 MLI
 9.902
 NE2
 O6
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:134 A:134 5.0 0.028 E -107.3 132.2 5.0 0.028 0.0 FAD
MLI
 9.630
9.034
 NE2
NE2
 O2
O7
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:134 A:134 5.0 0.028 E -110.2 138.5 5.0 0.028 0.0 FAD
MLI
 9.688
9.575
 NE2
NE2
 O2
O8
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:134 A:134 1.0 0.006 -79.9 142.3 1.0 0.006 0.0 FAD
 9.725
 NE2
 O2
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:134 A:134 5.0 0.028 -111.9 133.1 5.0 0.028 0.0 FAD
MLI
 9.496
8.896
 NE2
NE2
 O2
O9
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:134 A:134 4.0 0.022 E -110.8 132.9 4.0 0.022 0.0 FAD
 9.114
 NE2
 O2
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:134 A:134 6.0 0.033 -120.3 130.2 6.0 0.033 0.0 FAD
HOH
 9.317
9.510
 NE2
NE2
 O2
O
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:134 A:134 5.0 0.028 E -103.9 150.5 5.0 0.028 0.0
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLN A:134 A:134 4.0 0.022 E -123.7 135.1 4.0 0.022 0.0 FAD
OAA
HOH
 9.181
8.437
5.479
 NE2
NE2
C
 O2
O1
O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLN A:134 A:134 6.0 0.033 E -130.8 132.1 6.0 0.033 0.0 FAD
OAA
HOH
 9.265
8.615
6.013
 NE2
NE2
O
 O2
O1
O
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 GLN A:133 A:133 5.0 0.028 -123.3 140.3 5.0 0.028 0.0 FAD
TEO
HOH
 9.208
8.759
2.922
 NE2
NE2
NE2
 O2
O4B
O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 GLN A:133 A:133 3.0 0.017 -104.6 132.8 3.0 0.017 0.0 FAD
3NP
HOH
 9.215
9.691
2.985
 NE2
NE2
CG
 O2
C2
O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 GLN A:133 A:133 4.0 0.022 -118.8 136.4 4.0 0.022 0.0 FAD
Y3P
UNL
UNL
HOH
 9.336
8.732
3.019
7.447
2.769
 NE2
NE2
N
O
NE2
 O2
HC3
OAA
O
O
GLN E:133 N:133 4.0 0.022 -120.5 133.0 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLN A:133 A:133 5.0 0.028 -115.9 134.4 5.0 0.028 0.0 FAD
TEO
HOH
 9.284
8.762
2.895
 NE2
NE2
O
 O2
O4A
O
GLN E:133 N:133 5.0 0.028 -115.6 136.1 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLN A:133 A:133 7.0 0.039 -138.5 120.6 7.0 0.039 0.0 FAD
MLI
HOH
 9.365
9.235
2.993
 NE2
NE2
NE2
 O2
O9
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 GLN A:133 A:133 4.0 0.022 E -116.1 133.4 4.0 0.022 0.0 FAD
OAA
HOH
 9.335
8.788
2.753
 NE2
NE2
NE2
 O2
O2
O
GLN E:133 N:133 4.0 0.022 E -116.4 132.7 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:133 A:133 4.0 0.022 -124.7 130.4 4.0 0.022 0.0 FAD
OAA
HOH
 9.513
8.956
2.963
 NE2
NE2
NE2
 O2
O2
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:133 A:133 4.0 0.022 -121.5 141.5 4.0 0.022 0.0 FAD
OAA
UNL
HOH
 9.368
8.731
6.177
2.950
 NE2
NE2
C
NE2
 O2
O2
O
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:133 A:133 4.0 0.022 -117.9 137.0 4.0 0.022 0.0 FAD
Y3P
HOH
 9.123
8.589
2.973
 NE2
NE2
NE2
 O2
HC3
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 GLN A:133 A:133 5.0 0.028 E -132.0 126.9 5.0 0.028 0.0 FAD
OAA
HOH
 9.355
8.862
3.013
 NE2
NE2
NE2
 O2
O2
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:133 A:133 3.0 0.017 -138.7 134.9 3.0 0.017 0.0 FAD
OAA
HOH
 9.505
8.818
2.792
 NE2
NE2
NE2
 O2
O2
O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:133 A:133 4.0 0.022 -113.4 127.4 4.0 0.022 0.0 FAD
OAA
UNL
UNL
HOH
 9.064
8.850
2.975
9.863
2.823
 NE2
NE2
NE2
O
NE2
 O2
O2
O
O
O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:133 A:133 4.0 0.022 -124.4 134.7 4.0 0.022 0.0 FAD
OAA
HOH
 9.253
8.684
3.016
 NE2
NE2
NE2
 O2
O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 GLN A:176 A:176 5.0 0.028 -112.3 130.6