Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 226094 | . | C | A | CCDS3853.1:NM_004168.2:c.553Cag>Aag_NP_004159.2:p.185Q>K | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | GLN | A:153 | A:185 | 64.0 | NA | B | -67.4 | 143.7 | 64.0 | NA | NA | ||||||
| GLN | C:153 | C:185 | 90.0 | 0.5 | B | -66.6 | 137.5 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | GLN | A:185 | A:143 | 70.0 | 0.389 | E | -72.3 | 148.7 | 70.0 | 0.389 | 0.0 | ||||||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | GLN | A:185 | A:143 | 70.0 | 0.389 | E | -71.5 | 143.4 | 70.0 | 0.389 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | GLN | A:143 | A:143 | 76.0 | 0.422 | E | -55.6 | 128.3 | 76.0 | 0.422 | 0.0 |
HOH |
2.592 |
OE1 |
O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | GLN | A:143 | A:143 | 80.0 | 0.444 | E | -53.0 | 126.2 | 80.0 | 0.444 | 0.0 | ||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:143 | A:143 | 58.0 | 0.322 | E | -66.6 | 136.8 | 58.0 | 0.322 | 0.0 | ||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:143 | A:143 | 59.0 | 0.328 | B | -64.4 | 134.2 | 59.0 | 0.328 | 0.0 | ||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:143 | A:143 | 60.0 | 0.333 | E | -80.8 | 133.7 | 60.0 | 0.333 | 0.0 | ||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:143 | A:143 | 58.0 | 0.322 | E | -86.3 | 139.4 | 58.0 | 0.322 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:143 | A:143 | 63.0 | 0.35 | E | -49.7 | 128.1 | 63.0 | 0.35 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:143 | A:143 | 59.0 | 0.328 | B | -76.0 | 138.1 | 59.0 | 0.328 | 0.0 | ||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:143 | A:143 | 50.0 | 0.278 | E | -79.1 | 138.9 | 50.0 | 0.278 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:143 | A:143 | 52.0 | 0.289 | E | -105.7 | 134.8 | 52.0 | 0.289 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:143 | A:143 | 80.0 | 0.444 | E | -61.2 | 137.8 | 80.0 | 0.444 | 0.0 | ||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:143 | A:143 | 61.0 | 0.339 | E | -90.3 | 139.5 | 61.0 | 0.339 | 0.0 | ||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:143 | A:143 | 87.0 | 0.483 | E | -76.8 | 143.5 | 87.0 | 0.483 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:143 | A:143 | 62.0 | 0.344 | E | -66.3 | 134.7 | 62.0 | 0.344 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:143 | A:143 | 57.0 | 0.317 | -103.2 | 121.2 | 57.0 | 0.317 | 0.0 | |||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:143 | A:143 | 77.0 | 0.428 | B | -83.6 | 136.0 | 77.0 | 0.428 | 0.0 | ||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:143 | A:143 | 61.0 | 0.339 | E | -74.1 | 128.2 | 61.0 | 0.339 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:143 | A:143 | 62.0 | 0.344 | B | -65.8 | 137.5 | 62.0 | 0.344 | 0.0 | ||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:143 | A:143 | 61.0 | 0.339 | E | -75.6 | 142.1 | 61.0 | 0.339 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | GLN | A:143 | A:143 | 65.0 | 0.361 | E | -58.7 | 133.9 | 65.0 | 0.361 | 0.0 |
HOH |
2.958 |
N |
O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | GLN | A:143 | A:143 | 62.0 | 0.344 | E | -62.0 | 132.2 | 62.0 | 0.344 | 0.0 |
HOH |
2.846 |
NE2 |
O |
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| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLN | A:142 | A:142 | 59.0 | 0.328 | B | -58.7 | 129.0 | 59.0 | 0.328 | 0.0 |
UNL HOH |
7.398 2.708 |
O OE1 |
O1 O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLN | A:142 | A:142 | 61.0 | 0.339 | B | -50.9 | 128.4 | 61.0 | 0.339 | 0.0 |
HOH |
2.853 |
OE1 |
O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLN | A:142 | A:142 | 58.0 | 0.322 | B | -70.1 | 127.6 | 58.0 | 0.322 | 0.0 |
UNL UNL UNL UNL UNL HOH |
7.521 3.074 7.240 2.431 9.180 2.797 |
OE1 OE1 O O O N |
C2 OAA N1 O O O |
||
| GLN | E:142 | N:142 | 58.0 | 0.322 | B | -72.4 | 125.9 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | GLN | A:142 | A:142 | 60.0 | 0.333 | B | -61.3 | 127.9 | 60.0 | 0.333 | 0.0 |
HOH |
2.636 |
OE1 |
O |
||
| GLN | E:142 | N:142 | 57.0 | 0.317 | B | -60.7 | 129.5 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | GLN | A:142 | A:142 | 68.0 | 0.378 | B | -48.3 | 147.9 | 68.0 | 0.378 | 0.0 |
UNL HOH |
7.786 2.734 |
O O |
O1 O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | GLN | A:142 | A:142 | 57.0 | 0.317 | E | -62.2 | 127.2 | 57.0 | 0.317 | 0.0 |
HOH |
2.657 |
O |
O |
||
| GLN | E:142 | N:142 | 58.0 | 0.322 | E | -62.2 | 126.6 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:142 | A:142 | 60.0 | 0.333 | B | -68.3 | 133.1 | 60.0 | 0.333 | 0.0 |
HOH |
2.340 |
O |
O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:142 | A:142 | 60.0 | 0.333 | B | -69.6 | 137.7 | 60.0 | 0.333 | 0.0 |
UNL HOH |
8.092 2.293 |
OE1 O |
O O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:142 | A:142 | 59.0 | 0.328 | B | -67.9 | 133.0 | 59.0 | 0.328 | 0.0 |
UNL HOH |
7.298 2.685 |
O N |
O1 O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | GLN | A:142 | A:142 | 60.0 | 0.333 | E | -72.9 | 135.2 | 60.0 | 0.333 | 0.0 |
HOH |
4.819 |
NE2 |
O |
||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:142 | A:142 | 61.0 | 0.339 | B | -62.7 | 136.0 | 61.0 | 0.339 | 0.0 |
HOH |
4.071 |
NE2 |
O |
||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:142 | A:142 | 65.0 | 0.361 | B | -68.2 | 135.6 | 65.0 | 0.361 | 0.0 |
UNL UNL UNL HOH |
7.417 6.515 6.631 3.266 |
NE2 CG CG O |
O O O O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:142 | A:142 | 60.0 | 0.333 | B | -63.6 | 131.2 | 60.0 | 0.333 | 0.0 |
UNL UNL HOH |
7.411 6.995 2.708 |
O OE1 N |
O1 O O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | GLN | A:185 | A:185 | 60.0 | 0.333 | B | -67.2 | 134.8 | |