Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 226103 | . | C | A | CCDS3853.1:NM_004168.2:c.562Cgg>Agg_NP_004159.2:p.188R>R | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | ARG | A:156 | A:188 | 0.0 | 0.0 | -121.4 | -12.3 | 0.0 | 0.0 | 0.0 | |||||||
| ARG | C:156 | C:188 | 1.0 | 0.004 | -126.3 | -1.1 | NA | NA | NA | ||||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | ARG | A:188 | A:146 | 0.0 | 0.0 | E | -127.5 | 8.7 | 0.0 | 0.0 | 0.0 |
HOH |
7.922 |
NE |
O |
||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | ARG | A:188 | A:146 | 0.0 | 0.0 | E | -125.1 | 8.6 | 0.0 | 0.0 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | ARG | A:146 | A:146 | 1.0 | 0.004 | E | -132.2 | 13.9 | 1.0 | 0.004 | 0.0 |
FAD HOH |
9.990 3.291 |
O CB |
O2 O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | ARG | A:146 | A:146 | 1.0 | 0.004 | E | -131.4 | 18.4 | 1.0 | 0.004 | 0.0 |
FAD |
9.984 |
O |
O2 |
||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ARG | A:146 | A:146 | 0.0 | 0.0 | E | -136.8 | 25.3 | 0.0 | 0.0 | 0.0 |
FAD |
9.846 |
O |
O2 |
||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ARG | A:146 | A:146 | 0.0 | 0.0 | -134.3 | 16.0 | 0.0 | 0.0 | 0.0 | |||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ARG | A:146 | A:146 | 0.0 | 0.0 | E | -129.9 | 19.7 | 0.0 | 0.0 | 0.0 |
FAD |
9.811 |
O |
O2 |
||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ARG | A:146 | A:146 | 0.0 | 0.0 | E | -143.5 | 15.3 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ARG | A:146 | A:146 | 1.0 | 0.004 | E | -136.4 | 20.5 | 1.0 | 0.004 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ARG | A:146 | A:146 | 0.0 | 0.0 | -132.1 | 13.3 | 0.0 | 0.0 | 0.0 | |||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ARG | A:146 | A:146 | 0.0 | 0.0 | E | -136.2 | 10.1 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ARG | A:146 | A:146 | 1.0 | 0.004 | E | -138.0 | 2.0 | 1.0 | 0.004 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ARG | A:146 | A:146 | 0.0 | 0.0 | E | -139.0 | 24.3 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ARG | A:146 | A:146 | 0.0 | 0.0 | -145.5 | 24.4 | 0.0 | 0.0 | 0.0 | |||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ARG | A:146 | A:146 | 0.0 | 0.0 | E | -137.6 | 9.6 | 0.0 | 0.0 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ARG | A:146 | A:146 | 0.0 | 0.0 | E | -129.0 | 16.8 | 0.0 | 0.0 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ARG | A:146 | A:146 | 0.0 | 0.0 | E | -140.9 | 25.0 | 0.0 | 0.0 | 0.0 | ||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ARG | A:146 | A:146 | 0.0 | 0.0 | -132.2 | 12.7 | 0.0 | 0.0 | 0.0 | |||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ARG | A:146 | A:146 | 0.0 | 0.0 | E | -138.0 | 8.3 | 0.0 | 0.0 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ARG | A:146 | A:146 | 0.0 | 0.0 | -121.1 | 16.7 | 0.0 | 0.0 | 0.0 |
FAD |
9.901 |
O |
O2 |
|||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | ARG | A:146 | A:146 | 0.0 | 0.0 | E | -136.1 | 6.5 | 0.0 | 0.0 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | ARG | A:146 | A:146 | 0.0 | 0.0 | E | -127.9 | 7.5 | 0.0 | 0.0 | 0.0 |
HOH |
3.658 |
CB |
O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | ARG | A:146 | A:146 | 0.0 | 0.0 | E | -127.4 | -0.7 | 0.0 | 0.0 | 0.0 |
HOH |
7.275 |
N |
O |
||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | ARG | A:145 | A:145 | 0.0 | 0.0 | -128.2 | 12.5 | 0.0 | 0.0 | 0.0 |
UNL HOH |
8.532 2.913 |
NH2 N |
O1 O |
|||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | ARG | A:145 | A:145 | 0.0 | 0.0 | -125.7 | 17.0 | 0.0 | 0.0 | 0.0 |
HOH |
3.501 |
CB |
O |
|||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | ARG | A:145 | A:145 | 0.0 | 0.0 | -126.5 | 11.2 | 0.0 | 0.0 | 0.0 |
UNL UNL UNL HOH |
8.040 8.458 8.741 3.013 |
NH1 NH2 N N |
OAA N1 O O |
|||
| ARG | E:145 | N:145 | 0.0 | 0.0 | -125.7 | 14.3 | NA | NA | NA | ||||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | ARG | A:145 | A:145 | 0.0 | 0.0 | -123.8 | 10.0 | 0.0 | 0.0 | 0.0 |
HOH |
3.073 |
N |
O |
|||
| ARG | E:145 | N:145 | 1.0 | 0.004 | -123.3 | 9.2 | NA | NA | NA | ||||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | ARG | A:145 | A:145 | 0.0 | 0.0 | -126.2 | 29.0 | 0.0 | 0.0 | 0.0 |
UNL UNL HOH |
9.255 9.831 2.815 |
NH2 NH2 N |
O1 O1 O |
|||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | ARG | A:145 | A:145 | 0.0 | 0.0 | E | -128.9 | 10.3 | 0.0 | 0.0 | 0.0 |
HOH |
3.024 |
N |
O |
||
| ARG | E:145 | N:145 | 0.0 | 0.0 | E | -127.8 | 12.4 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | ARG | A:145 | A:145 | 0.0 | 0.0 | -127.0 | 10.5 | 0.0 | 0.0 | 0.0 |
HOH |
3.110 |
N |
O |
|||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | ARG | A:145 | A:145 | 0.0 | 0.0 | -128.8 | 17.3 | 0.0 | 0.0 | 0.0 |
UNL HOH |
9.762 2.917 |
NH1 N |
O O |
|||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | ARG | A:145 | A:145 | 1.0 | 0.004 | -125.0 | 12.1 | 1.0 | 0.004 | 0.0 |
UNL UNL HOH |
8.661 9.678 3.011 |
NH2 NH2 N |
O2 O2 O |
|||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | ARG | A:145 | A:145 | 0.0 | 0.0 | E | -131.8 | 9.7 | 0.0 | 0.0 | 0.0 |
HOH |
2.862 |
N |
O |
||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | ARG | A:145 | A:145 | 0.0 | 0.0 | -128.0 | 13.1 | 0.0 | 0.0 | 0.0 |
HOH |
3.073 |
N |
O |
|||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | ARG | A:145 | A:145 | 0.0 | 0.0 | -126.1 | 15.2 | 0.0 | 0.0 | 0.0 |
UNL UNL UNL UNL HOH |
9.872 8.339 6.748 7.902 3.237 |
NH2 NH2 CG N N |
O2 O O O O |
|||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | ARG | A:145 | A:145 | 0.0 | 0.0 | -125.7 | 10.4 | 0.0 | 0.0 | 0.0 |
UNL UNL HOH |
8.283 9.798 3.073 |
NH2 NH2 N |
O2 O1 O |
|||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | ARG | A:188 | A:188 | 0.0 | 0.0 | -120.9 | 3.3 | ||