Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 226108 | . | C | A | CCDS3853.1:NM_004168.2:c.567tgC>tgA_NP_004159.2:p.189C>* | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | CYS | A:157 | A:189 | 6.0 | 0.044 | E | -78.3 | 104.5 | 6.0 | 0.044 | 0.0 |
FAD OAA |
6.844 7.402 |
SG SG |
N3 O5 |
||
| CYS | C:157 | C:189 | 0.0 | 0.0 | E | -85.7 | 109.2 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | CYS | A:189 | A:147 | 2.0 | 0.015 | E | -82.2 | 89.6 | 2.0 | 0.015 | 0.0 |
FAD |
6.129 |
SG |
O4 |
||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | CYS | A:189 | A:147 | 1.0 | 0.007 | E | -86.1 | 96.6 | 1.0 | 0.007 | 0.0 |
FAD |
6.810 |
SG |
O4 |
||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | CYS | A:147 | A:147 | 4.0 | 0.03 | E | -84.2 | 92.9 | 4.0 | 0.03 | 0.0 |
FAD HOH |
6.625 4.592 |
SG SG |
N3 O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | CYS | A:147 | A:147 | 4.0 | 0.03 | E | -88.4 | 90.2 | 4.0 | 0.03 | 0.0 |
FAD 3NP |
6.700 7.089 |
SG SG |
N3 O3 |
||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:147 | A:147 | 1.0 | 0.007 | E | -97.9 | 95.8 | 1.0 | 0.007 | 0.0 |
FAD MLI |
6.456 7.241 |
SG SG |
O4 C1 |
||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:147 | A:147 | 4.0 | 0.03 | E | -89.0 | 99.2 | 4.0 | 0.03 | 0.0 |
FAD MLI |
6.811 6.970 |
SG SG |
N3 O9 |
||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:147 | A:147 | 0.0 | 0.0 | E | -94.1 | 99.4 | 0.0 | 0.0 | 0.0 |
FAD MLI |
6.453 6.848 |
SG SG |
O4 C1 |
||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:147 | A:147 | 1.0 | 0.007 | E | -90.4 | 98.8 | 1.0 | 0.007 | 0.0 |
FAD |
6.771 |
SG |
N3 |
||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:147 | A:147 | 0.0 | 0.0 | E | -90.6 | 95.1 | 0.0 | 0.0 | 0.0 |
FAD MLI |
6.793 6.666 |
SG SG |
O4 O7 |
||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:147 | A:147 | 1.0 | 0.007 | E | -85.8 | 100.3 | 1.0 | 0.007 | 0.0 |
FAD MLI |
6.731 6.915 |
SG SG |
N3 O9 |
||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:147 | A:147 | 2.0 | 0.015 | E | -82.9 | 95.4 | 2.0 | 0.015 | 0.0 |
FAD |
6.872 |
SG |
N3 |
||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:147 | A:147 | 4.0 | 0.03 | E | -79.1 | 97.5 | 4.0 | 0.03 | 0.0 |
FAD |
7.179 |
SG |
N3 |
||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:147 | A:147 | 1.0 | 0.007 | E | -98.3 | 97.4 | 1.0 | 0.007 | 0.0 |
FAD |
6.779 |
SG |
N3 |
||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:147 | A:147 | 1.0 | 0.007 | E | -97.9 | 96.7 | 1.0 | 0.007 | 0.0 |
FAD MLI |
6.881 6.365 |
SG SG |
N3 O6 |
||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:147 | A:147 | 3.0 | 0.022 | E | -87.6 | 100.1 | 3.0 | 0.022 | 0.0 |
FAD MLI |
6.767 6.673 |
SG SG |
N3 O7 |
||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:147 | A:147 | 2.0 | 0.015 | E | -88.4 | 95.5 | 2.0 | 0.015 | 0.0 |
FAD MLI |
6.725 7.285 |
SG SG |
N3 O8 |
||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:147 | A:147 | 3.0 | 0.022 | E | -104.2 | 99.5 | 3.0 | 0.022 | 0.0 |
FAD |
6.888 |
SG |
N3 |
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| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:147 | A:147 | 3.0 | 0.022 | E | -88.5 | 95.9 | 3.0 | 0.022 | 0.0 |
FAD MLI |
6.724 7.238 |
SG SG |
N3 O9 |
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| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:147 | A:147 | 0.0 | 0.0 | E | -81.1 | 101.7 | 0.0 | 0.0 | 0.0 |
FAD |
6.636 |
SG |
N3 |
||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:147 | A:147 | 1.0 | 0.007 | E | -84.3 | 102.2 | 1.0 | 0.007 | 0.0 |
FAD HOH |
6.405 7.678 |
SG SG |
O4 O |
||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | CYS | A:147 | A:147 | 4.0 | 0.03 | E | -77.7 | 103.9 | 4.0 | 0.03 | 0.0 |
FAD |
7.048 |
SG |
N3 |
||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | CYS | A:147 | A:147 | 2.0 | 0.015 | E | -80.5 | 98.1 | 2.0 | 0.015 | 0.0 |
FAD OAA HOH |
6.589 7.109 6.116 |
SG SG O |
O4 O4 O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | CYS | A:147 | A:147 | 0.0 | 0.0 | E | -71.0 | 108.2 | 0.0 | 0.0 | 0.0 |
FAD OAA HOH |
6.499 6.995 6.982 |
SG SG O |
O4 O4 O |
||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | CYS | A:146 | A:146 | 0.0 | 0.0 | E | -92.4 | 100.9 | 0.0 | 0.0 | 0.0 |
FAD TEO HOH |
6.350 7.015 3.579 |
SG SG N |
O4 O1A O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | CYS | A:146 | A:146 | 0.0 | 0.0 | E | -86.8 | 94.4 | 0.0 | 0.0 | 0.0 |
FAD 3NP HOH |
6.470 6.986 6.283 |
SG SG N |
O4 O2 O |
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| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | CYS | A:146 | A:146 | 0.0 | 0.0 | E | -87.0 | 97.2 | 0.0 | 0.0 | 0.0 |
FAD Y3P HOH |
6.351 6.209 3.668 |
SG SG N |
O4 HC3 O |
||
| CYS | E:146 | N:146 | 0.0 | 0.0 | E | -91.7 | 99.1 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | CYS | A:146 | A:146 | 0.0 | 0.0 | E | -84.7 | 97.8 | 0.0 | 0.0 | 0.0 |
FAD TEO HOH |
6.411 7.089 3.660 |
SG SG N |
O4 O1A O |
||
| CYS | E:146 | N:146 | 0.0 | 0.0 | E | -84.4 | 100.1 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | CYS | A:146 | A:146 | 0.0 | 0.0 | E | -101.1 | 92.1 | 0.0 | 0.0 | 0.0 |
FAD MLI HOH |
6.572 7.377 3.521 |
SG SG N |
O4 O7 O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | CYS | A:146 | A:146 | 0.0 | 0.0 | E | -84.4 | 97.5 | 0.0 | 0.0 | 0.0 |
FAD OAA HOH |
6.398 7.089 3.602 |
SG SG N |
O4 O5 O |
||
| CYS | E:146 | N:146 | 0.0 | 0.0 | E | -87.5 | 97.7 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | CYS | A:146 | A:146 | 0.0 | 0.0 | E | -82.1 | 102.0 | 0.0 | 0.0 | 0.0 |
FAD OAA HOH |
6.508 7.081 3.707 |
SG SG N |
O4 O4 O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | CYS | A:146 | A:146 | 0.0 | 0.0 | E | -90.9 | 96.7 | 0.0 | 0.0 | 0.0 |
FAD OAA HOH |
6.589 7.281 3.770 |
SG SG N |
O4 O4 O |
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| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | CYS | A:146 | A:146 | 0.0 | 0.0 | E | -89.8 | 101.5 | 0.0 | 0.0 | 0.0 |
FAD Y3P HOH |
6.490 6.502 3.713 |
SG SG N |
O4 HC3 O |
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| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | CYS | A:146 | A:146 | 0.0 | 0.0 | E | -86.6 | 97.0 | 0.0 | 0.0 | 0.0 |
FAD OAA HOH |
6.410 6.890 3.659 |
SG SG N |
O4 O4 O |
||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | CYS | A:146 | A:146 | 0.0 | 0.0 | E | -88.7 | 93.6 | 0.0 | 0.0 | 0.0 |
FAD OAA HOH |
6.349 7.040 3.835 |
SG SG N |
O4 C2 O |
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| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | CYS | A:146 | A:146 | 0.0 | 0.0 | E | -92.4 | 96.2 | 0.0 | 0.0 | 0.0 |
FAD OAA UNL UNL HOH |
6.479 7.129 6.218 7.858 3.902 |
SG SG CB CB N |
O4 O4 O O O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | CYS | A:146 | A:146 | 0.0 | 0.0 | E | -87.8 | 102.2 | 0.0 | 0.0 | 0.0 |
FAD OAA HOH |
6.552 7.187 3.658 |
SG SG N |
O4 O4 O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | CYS | A:189 | A:189 | 0.0 | 0.0 | E | -82.0 | 94.3 | |