Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 226149 . C A CCDS3853.1:NM_004168.2:c.608aCc>aAc_NP_004159.2:p.203T>N Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 THR A:171 A:203 14.0 0.1 H -73.1 -47.1 14.0 0.1 0.0
THR C:171 C:203 11.0 0.079 H -71.9 -48.7 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 THR A:203 A:161 19.0 0.136 H -65.1 -59.8 7.0 0.05 0.086 B:Q007T0:0.086
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 THR A:203 A:161 20.0 0.143 H -71.4 -36.4 4.0 0.029 0.114 B:Q007T0:0.114
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 THR A:161 A:161 23.0 0.164 H -72.6 -38.6 9.0 0.064 0.1 B:Q007T0:0.1
 HOH
 2.729
 CB
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 THR A:161 A:161 22.0 0.157 H -66.4 -40.7 8.0 0.057 0.1 B:None:0.1
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:161 A:161 26.0 0.186 H -76.9 -36.3 7.0 0.05 0.136 B:Q007T0:0.136
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:161 A:161 17.0 0.121 H -67.5 -44.7 6.0 0.043 0.078 B:Q007T0:0.079
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:161 A:161 27.0 0.193 H -71.1 -33.1 6.0 0.043 0.15 B:Q007T0:0.15
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:161 A:161 26.0 0.186 H -73.7 -27.2 7.0 0.05 0.136 B:Q007T0:0.136
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:161 A:161 23.0 0.164 H -79.4 -39.7 4.0 0.029 0.135 B:Q007T0:0.136
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:161 A:161 23.0 0.164 H -71.5 -26.2 5.0 0.036 0.128 B:Q007T0:0.129
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:161 A:161 23.0 0.164 H -71.1 -19.1 5.0 0.036 0.128 B:Q007T0:0.129
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:161 A:161 25.0 0.179 H -77.5 -20.4 5.0 0.036 0.143 B:Q007T0:0.143
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:161 A:161 23.0 0.164 H -81.5 -17.8 4.0 0.029 0.135 B:Q007T0:0.136
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:161 A:161 25.0 0.179 H -81.8 -13.1 6.0 0.043 0.136 B:Q007T0:0.136
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:161 A:161 25.0 0.179 H -79.6 -26.8 5.0 0.036 0.143 B:Q007T0:0.143
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:161 A:161 22.0 0.157 H -80.7 -38.4 4.0 0.029 0.128 B:Q007T0:0.129
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:161 A:161 21.0 0.15 H -77.9 -32.5 3.0 0.021 0.129 B:Q007T0:0.129
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:161 A:161 24.0 0.171 H -76.9 -38.8 5.0 0.036 0.135 B:Q007T0:0.136
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:161 A:161 26.0 0.186 H -70.3 -43.8 8.0 0.057 0.129 B:Q007T0:0.129
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:161 A:161 21.0 0.15 H -75.6 -50.4 7.0 0.05 0.1 B:Q007T0:0.1
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 THR A:161 A:161 28.0 0.2 H -77.3 -30.5 5.0 0.036 0.164 B:Q007T0:0.164
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 THR A:161 A:161 26.0 0.186 H -63.9 -40.3 6.0 0.043 0.143 B:Q007T0:0.143
 HOH
 3.243
 O
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 THR A:161 A:161 21.0 0.15 H -56.7 -53.9 13.0 0.093 0.057 B:Q007T0:0.057
 HOH
 9.115
 OG1
 O
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 THR A:160 A:160 21.0 0.15 H -68.8 -44.9 10.0 0.071 0.079 B:Q9YHT2:0.079
 HOH
 2.935
 O
 O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 THR A:160 A:160 18.0 0.129 H -65.9 -46.8 8.0 0.057 0.072 B:3851612:0.071
 HOH
 3.113
 OG1
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 THR A:160 A:160 20.0 0.143 H -66.3 -48.7 12.0 0.086 0.057 B:Q9YHT2:0.057
 UNL
UNL
HOH
 3.430
4.663
2.943
 OG1
N
O
 O
O
O
THR E:160 N:160 20.0 0.143 H -67.3 -49.8 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 THR A:160 A:160 21.0 0.15 H -69.5 -47.3 11.0 0.079 0.071 B:Q9YHT2:0.071
 HOH
 2.910
 O
 O
THR E:160 N:160 23.0 0.164 H -70.2 -47.5 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 THR A:160 A:160 21.0 0.15 H -68.0 -51.5 11.0 0.079 0.071 B:Q9YHT2:0.071
 HOH
 3.344
 O
 O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 THR A:160 A:160 21.0 0.15 H -69.1 -45.4 12.0 0.086 0.064 B:Q9YHT2:0.064
 HOH
 2.907
 O
 O
THR E:160 N:160 21.0 0.15 H -69.1 -46.4 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 THR A:160 A:160 20.0 0.143 H -59.8 -50.5 10.0 0.071 0.072 B:Q9YHT2:0.071
 HOH
 2.952
 OG1
 O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 THR A:160 A:160 21.0 0.15 H -69.2 -41.5 12.0 0.086 0.064 B:Q9YHT2:0.064
 HOH
 3.576
 OG1
 O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 THR A:160 A:160 20.0 0.143 H -69.4 -45.9 10.0 0.071 0.072 B:Q9YHT2:0.071
 HOH
 3.072
 OG1
 O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 THR A:160 A:160 18.0 0.129 H -67.7 -44.7 10.0 0.071 0.058 B:Q9YHT2:0.057
 UNL
HOH
 8.693
3.360
 CG2
OG1
 N3
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 THR A:160 A:160 17.0 0.121 H -70.5 -43.3 9.0 0.064 0.057 B:Q9YHT2:0.057
 HOH
 3.465
 OG1
 O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 THR A:160 A:160 21.0 0.15 H -67.8 -43.0 10.0 0.071 0.079 B:Q9YHT2:0.079
 HOH
 3.939
 OG1
 O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 THR A:160 A:160 19.0 0.136 H -66.6 -47.5 10.0 0.071 0.065 B:Q9YHT2:0.064
 UNL
HOH
 9.950
3.080
 CG2
OG1
 O
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 THR A:203 A:203 18.0 0.129 H -64.1 -47.0