Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 228306 . C A CCDS3853.1:NM_004168.2:c.628Cga>Aga_NP_004159.2:p.210R>R Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 ARG A:178 A:210 75.0 NA H -66.8 -25.4 75.0 NA NA
ARG C:178 C:210 156.0 0.693 H -63.3 -37.2 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 ARG A:210 A:168 182.0 0.809 T -86.9 11.7 82.0 0.364 0.445 B:Q007T0:0.444
 HOH
 5.322
 NH1
 O
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 ARG A:210 A:168 184.0 0.818 T -64.2 -5.0 64.0 0.284 0.534 B:Q007T0:0.533
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 ARG A:168 A:168 187.0 0.831 T -70.2 -13.9 83.0 0.369 0.462 B:Q007T0:0.462
 HOH
 2.622
 NH2
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 ARG A:168 A:168 185.0 0.822 T -72.4 -12.9 89.0 0.396 0.426 B:None:0.427
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:168 A:168 182.0 0.809 T -82.6 -13.7 79.0 0.351 0.458 B:Q007T0:0.458
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:168 A:168 179.0 0.796 T -76.8 -21.2 81.0 0.36 0.436 B:Q007T0:0.436
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:168 A:168 179.0 0.796 T -80.9 -8.5 79.0 0.351 0.445 B:Q007T0:0.444
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:168 A:168 179.0 0.796 T -81.6 -8.9 89.0 0.396 0.4 B:Q007T0:0.4
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:168 A:168 187.0 0.831 T -65.0 -23.3 105.0 0.467 0.364 B:Q007T0:0.364
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:168 A:168 187.0 0.831 T -86.0 8.9 73.0 0.324 0.507 B:Q007T0:0.507
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:168 A:168 180.0 0.8 T -61.0 -21.8 76.0 0.338 0.462 B:Q007T0:0.462
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:168 A:168 181.0 0.804 T -73.0 -23.1 70.0 0.311 0.493 B:Q007T0:0.493
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:168 A:168 182.0 0.809 T -76.5 -8.7 83.0 0.369 0.44 B:Q007T0:0.44
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:168 A:168 183.0 0.813 T -77.6 -14.6 82.0 0.364 0.449 B:Q007T0:0.449
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:168 A:168 180.0 0.8 T -72.6 -15.5 68.0 0.302 0.498 B:Q007T0:0.498
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:168 A:168 182.0 0.809 T -73.1 -13.9 82.0 0.364 0.445 B:Q007T0:0.444
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:168 A:168 183.0 0.813 S -71.7 -28.2 67.0 0.298 0.515 B:Q007T0:0.516
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:168 A:168 182.0 0.809 T -79.6 -18.0 71.0 0.316 0.493 B:Q007T0:0.493
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:168 A:168 179.0 0.796 T -66.0 -25.0 71.0 0.316 0.48 B:Q007T0:0.48
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:168 A:168 185.0 0.822 T -78.1 -6.7 95.0 0.422 0.4 B:Q007T0:0.4
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 ARG A:168 A:168 185.0 0.822 T -75.2 2.8 70.0 0.311 0.511 B:Q007T0:0.511
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 ARG A:168 A:168 184.0 0.818 T -78.1 -15.4 73.0 0.324 0.494 B:Q007T0:0.493
 HOH
 3.342
 CD
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 ARG A:168 A:168 184.0 0.818 T -70.5 -17.4 67.0 0.298 0.52 B:Q007T0:0.52
 HOH
 4.514
 CA
 O
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 ARG A:167 A:167 182.0 0.809 T -86.3 -6.7 83.0 0.369 0.44 B:Q9YHT2:0.44
 UNL
UNL
HOH
 3.843
6.643
3.267
 O
N
NH1
 O1
O1
O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 ARG A:167 A:167 175.0 0.778 T -89.9 1.6 74.0 0.329 0.449 B:3851612:0.449
 HOH
 3.251
 NH2
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 ARG A:167 A:167 190.0 0.844 T -87.0 -11.0 79.0 0.351 0.493 B:Q9YHT2:0.493
 UNL
UNL
UNL
UNL
UNL
HOH
 5.648
9.511
3.982
3.570
9.713
2.928
 N
NH1
NH2
NH2
NH2
O
 O
O
N1
N3
O
O
ARG E:167 N:167 190.0 0.844 T -85.0 -12.6 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ARG A:167 A:167 197.0 0.876 T -88.0 -1.1 86.0 0.382 0.494 B:Q9YHT2:0.493
 UNL
HOH
 7.253
2.479
 O
O
 O1
O
ARG E:167 N:167 192.0 0.853 T -87.9 -2.7 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 ARG A:167 A:167 180.0 0.8 T -96.5 -5.9 102.0 0.453 0.347 B:Q9YHT2:0.347
 UNL
UNL
HOH
 4.000
9.953
3.276
 O
N
NH2
 O1
O1
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 ARG A:167 A:167 187.0 0.831 T -89.8 -7.3 78.0 0.347 0.484 B:Q9YHT2:0.484
 UNL
HOH
 7.246
2.675
 O
NE
 C2
O
ARG E:167 N:167 185.0 0.822 T -89.9 -6.7 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:167 A:167 180.0 0.8 T -86.0 -4.7 78.0 0.347 0.453 B:Q9YHT2:0.453
 UNL
UNL
HOH
 8.483
9.358
2.998
 N
NH2
NH2
 N2
N1
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:167 A:167 181.0 0.804 T -92.8 -2.9 79.0 0.351 0.453 B:Q9YHT2:0.453
 UNL
UNL
HOH
 9.644
9.082
3.121
 NH2
N
NH1
 N1
C2
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:167 A:167 183.0 0.813 T -83.2 -1.2 81.0 0.36 0.453 B:Q9YHT2:0.453
 UNL
UNL
UNL
UNL
HOH
 8.966
8.777
6.510
8.641
3.116
 NH2
CA
NH1
N
NH1
 N1
O2
O
C2
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 ARG A:167 A:167 178.0 0.791 T -85.8 -8.1 77.0 0.342 0.449 B:Q9YHT2:0.449
 UNL
UNL
UNL
UNL
HOH
 5.847
3.337
9.184
4.556
3.144
 N
NH2
NH2
NH1
NH1
 O8
O
O1
N3
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:167 A:167 182.0 0.809 T -82.3 -16.9 76.0 0.338 0.471 B:Q9YHT2:0.471
 UNL
HOH
 5.852
3.341
 N
NH1
 O8
O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:167 A:167 176.0 0.782 T -94.8 0.0 77.0 0.342 0.44 B:Q9YHT2:0.44
 UNL
UNL
UNL
HOH
 9.128
8.091
8.845
2.901
 NH2
CA
N
NH1
 N1
O1
C1
O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 ARG A:167 A:167 184.0 0.818 T -80.1 -6.4 82.0 0.364 0.454 B:Q9YHT2:0.453
 UNL
UNL
UNL
UNL
HOH
 9.099
8.906
6.294
8.768
3.034
 NH2
O
NH1
N
NH2
 N1
O1
O
C2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 ARG A:210 A:210 177.0 0.787 T -78.4 -15.6