Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 233639 | . | G | A | CCDS3853.1:NM_004168.2:c.943Gga>Aga_NP_004159.2:p.315G>R | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | GLY | A:283 | A:315 | 27.0 | 0.36 | T | 122.8 | -1.6 | 27.0 | 0.36 | 0.0 | ||||||
| GLY | C:283 | C:315 | 25.0 | 0.333 | T | 144.9 | 3.0 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | GLY | A:315 | A:273 | 32.0 | 0.427 | T | 100.1 | 14.6 | 32.0 | 0.427 | 0.0 | ||||||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | GLY | A:315 | A:273 | 41.0 | 0.547 | T | 86.6 | -7.8 | 41.0 | 0.547 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | GLY | A:273 | A:273 | 24.0 | 0.32 | T | 142.9 | -33.5 | 24.0 | 0.32 | 0.0 |
HOH |
8.171 |
N |
O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | GLY | A:273 | A:273 | 24.0 | 0.32 | T | 142.5 | -29.7 | 24.0 | 0.32 | 0.0 | ||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:273 | A:273 | 27.0 | 0.36 | T | 125.9 | 10.1 | 27.0 | 0.36 | 0.0 | ||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:273 | A:273 | 32.0 | 0.427 | T | 117.8 | 17.1 | 32.0 | 0.427 | 0.0 | ||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:273 | A:273 | 25.0 | 0.333 | T | 137.0 | 8.6 | 25.0 | 0.333 | 0.0 | ||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:273 | A:273 | 42.0 | 0.56 | T | 96.0 | 2.6 | 42.0 | 0.56 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:273 | A:273 | 26.0 | 0.347 | T | 121.2 | 6.7 | 26.0 | 0.347 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:273 | A:273 | 27.0 | 0.36 | T | 162.9 | 3.4 | 27.0 | 0.36 | 0.0 | ||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:273 | A:273 | 28.0 | 0.373 | T | 132.7 | 3.3 | 28.0 | 0.373 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:273 | A:273 | 29.0 | 0.387 | T | 145.1 | 22.8 | 29.0 | 0.387 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:273 | A:273 | 24.0 | 0.32 | T | 159.2 | 11.3 | 24.0 | 0.32 | 0.0 | ||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:273 | A:273 | 28.0 | 0.373 | T | 142.4 | 26.0 | 28.0 | 0.373 | 0.0 | ||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:273 | A:273 | 27.0 | 0.36 | T | 159.3 | 33.9 | 27.0 | 0.36 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:273 | A:273 | 27.0 | 0.36 | T | 127.6 | 12.5 | 27.0 | 0.36 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:273 | A:273 | 24.0 | 0.32 | T | 155.9 | 23.5 | 24.0 | 0.32 | 0.0 | ||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:273 | A:273 | 35.0 | 0.467 | T | 126.1 | 11.1 | 35.0 | 0.467 | 0.0 | ||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:273 | A:273 | 36.0 | 0.48 | T | 112.2 | -3.8 | 36.0 | 0.48 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:273 | A:273 | 33.0 | 0.44 | T | 114.0 | 4.4 | 33.0 | 0.44 | 0.0 | ||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:273 | A:273 | 28.0 | 0.373 | T | 150.7 | -5.3 | 28.0 | 0.373 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | GLY | A:273 | A:273 | 31.0 | 0.413 | T | 115.2 | 7.6 | 31.0 | 0.413 | 0.0 |
HOH |
8.807 |
N |
O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | GLY | A:273 | A:273 | 31.0 | 0.413 | T | 112.8 | 8.6 | 31.0 | 0.413 | 0.0 |
HOH |
8.060 |
N |
O |
||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLY | A:272 | A:272 | 32.0 | 0.427 | T | 114.7 | -1.7 | 32.0 | 0.427 | 0.0 |
HOH |
3.543 |
C |
O |
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| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLY | A:272 | A:272 | 32.0 | 0.427 | T | 119.6 | 8.0 | 32.0 | 0.427 | 0.0 |
HOH |
3.605 |
CA |
O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLY | A:272 | A:272 | 32.0 | 0.427 | T | 120.9 | 0.5 | 32.0 | 0.427 | 0.0 |
UNL HOH |
3.368 3.723 |
O C |
C5 O |
||
| GLY | E:272 | N:272 | 32.0 | 0.427 | T | 120.2 | 1.0 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | GLY | A:272 | A:272 | 32.0 | 0.427 | T | 120.7 | -5.2 | 32.0 | 0.427 | 0.0 |
HOH |
3.011 |
O |
O |
||
| GLY | E:272 | N:272 | 31.0 | 0.413 | T | 122.5 | -4.6 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | GLY | A:272 | A:272 | 29.0 | 0.387 | T | 134.7 | -20.8 | 29.0 | 0.387 | 0.0 |
HOH |
4.376 |
CA |
O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | GLY | A:272 | A:272 | 32.0 | 0.427 | T | 117.9 | -4.5 | 32.0 | 0.427 | 0.0 |
UNL HOH |
3.311 3.664 |
O C |
O6 O |
||
| GLY | E:272 | N:272 | 31.0 | 0.413 | T | 116.8 | -5.6 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:272 | A:272 | 29.0 | 0.387 | T | 132.5 | -8.7 | 29.0 | 0.387 | 0.0 |
HOH |
4.005 |
C |
O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:272 | A:272 | 30.0 | 0.4 | T | 138.4 | 2.3 | 30.0 | 0.4 | 0.0 |
HOH |
3.664 |
C |
O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:272 | A:272 | 33.0 | 0.44 | T | 128.5 | -17.9 | 33.0 | 0.44 | 0.0 |
HOH |
6.266 |
N |
O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | GLY | A:272 | A:272 | 30.0 | 0.4 | T | 131.4 | -4.7 | 30.0 | 0.4 | 0.0 | ||||||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:272 | A:272 | 30.0 | 0.4 | T | 136.6 | -0.2 | 30.0 | 0.4 | 0.0 | ||||||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:272 | A:272 | 29.0 | 0.387 | T | 141.0 | -1.7 | 29.0 | 0.387 | 0.0 |
UNL UNL HOH |
5.838 3.959 3.912 |
N N C |
O O O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:272 | A:272 | 30.0 | 0.4 | T | 134.0 | -13.7 | 30.0 | 0.4 | 0.0 |
UNL HOH |
6.515 6.372 |
O N |
O O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | GLY | A:315 | A:315 | 35.0 | 0.467 | T | 109.5 | 4.7 | |