Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 235294 | . | A | C | CCDS3853.1:NM_004168.2:c.1100cAg>cCg_NP_004159.2:p.367Q>P | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | GLN | A:335 | A:367 | 39.0 | 0.217 | E | -93.1 | 127.8 | 39.0 | 0.217 | 0.0 | ||||||
| GLN | C:335 | C:367 | 37.0 | 0.206 | E | -91.5 | 131.4 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | GLN | A:367 | A:325 | 41.0 | 0.228 | E | -95.9 | 143.8 | 41.0 | 0.228 | 0.0 | ||||||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | GLN | A:367 | A:325 | 30.0 | 0.167 | E | -120.4 | 126.8 | 30.0 | 0.167 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | GLN | A:325 | A:325 | 56.0 | 0.311 | E | -111.0 | 142.5 | 56.0 | 0.311 | 0.0 |
HOH |
8.174 |
C |
O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | GLN | A:325 | A:325 | 57.0 | 0.317 | E | -111.0 | 142.0 | 57.0 | 0.317 | 0.0 | ||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:325 | A:325 | 50.0 | 0.278 | E | -86.7 | 133.9 | 50.0 | 0.278 | 0.0 | ||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:325 | A:325 | 52.0 | 0.289 | E | -90.1 | 140.7 | 52.0 | 0.289 | 0.0 | ||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:325 | A:325 | 52.0 | 0.289 | E | -84.7 | 132.3 | 52.0 | 0.289 | 0.0 | ||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:325 | A:325 | 57.0 | 0.317 | E | -92.9 | 127.2 | 57.0 | 0.317 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:325 | A:325 | 53.0 | 0.294 | E | -101.9 | 128.7 | 53.0 | 0.294 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:325 | A:325 | 47.0 | 0.261 | E | -79.1 | 132.0 | 47.0 | 0.261 | 0.0 | ||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:325 | A:325 | 50.0 | 0.278 | E | -94.2 | 123.8 | 50.0 | 0.278 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:325 | A:325 | 53.0 | 0.294 | E | -89.4 | 107.4 | 53.0 | 0.294 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:325 | A:325 | 63.0 | 0.35 | E | -88.2 | 124.9 | 63.0 | 0.35 | 0.0 | ||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:325 | A:325 | 62.0 | 0.344 | E | -102.1 | 130.1 | 62.0 | 0.344 | 0.0 | ||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:325 | A:325 | 50.0 | 0.278 | E | -99.2 | 131.7 | 50.0 | 0.278 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:325 | A:325 | 54.0 | 0.3 | E | -84.4 | 134.0 | 54.0 | 0.3 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:325 | A:325 | 61.0 | 0.339 | E | -100.0 | 135.4 | 61.0 | 0.339 | 0.0 | ||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:325 | A:325 | 40.0 | 0.222 | E | -102.8 | 126.2 | 40.0 | 0.222 | 0.0 | ||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:325 | A:325 | 52.0 | 0.289 | E | -98.0 | 132.9 | 52.0 | 0.289 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:325 | A:325 | 45.0 | 0.25 | E | -78.6 | 126.2 | 45.0 | 0.25 | 0.0 | ||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLN | A:325 | A:325 | 56.0 | 0.311 | E | -101.6 | 127.1 | 56.0 | 0.311 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | GLN | A:325 | A:325 | 43.0 | 0.239 | E | -100.5 | 140.8 | 43.0 | 0.239 | 0.0 | ||||||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | GLN | A:325 | A:325 | 44.0 | 0.244 | E | -94.9 | 132.8 | 44.0 | 0.244 | 0.0 | ||||||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLN | A:324 | A:324 | 38.0 | 0.211 | E | -103.9 | 124.5 | 38.0 | 0.211 | 0.0 |
HOH |
2.706 |
OE1 |
O |
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| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLN | A:324 | A:324 | 37.0 | 0.206 | E | -100.2 | 129.6 | 37.0 | 0.206 | 0.0 |
HOH |
7.175 |
NE2 |
O |
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| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLN | A:324 | A:324 | 38.0 | 0.211 | E | -102.3 | 125.7 | 38.0 | 0.211 | 0.0 |
UNL HOH |
4.357 2.841 |
NE2 OE1 |
C9 O |
||
| GLN | E:324 | N:324 | 38.0 | 0.211 | E | -104.8 | 123.9 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | GLN | A:324 | A:324 | 35.0 | 0.194 | E | -100.1 | 123.3 | 35.0 | 0.194 | 0.0 |
HOH |
2.880 |
OE1 |
O |
||
| GLN | E:324 | N:324 | 37.0 | 0.206 | E | -99.2 | 122.2 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | GLN | A:324 | A:324 | 40.0 | 0.222 | E | -93.8 | 136.6 | 40.0 | 0.222 | 0.0 |
UNL HOH |
8.748 8.419 |
NE2 O |
O1 O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | GLN | A:324 | A:324 | 39.0 | 0.217 | E | -103.2 | 122.5 | 39.0 | 0.217 | 0.0 |
UNL UNL UNL HOH |
5.002 6.357 5.266 3.166 |
NE2 OE1 NE2 OE1 |
O2 C2 C2 O |
||
| GLN | E:324 | N:324 | 36.0 | 0.2 | E | -102.7 | 121.9 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:324 | A:324 | 32.0 | 0.178 | E | -91.1 | 119.7 | 32.0 | 0.178 | 0.0 |
HOH |
4.024 |
C |
O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:324 | A:324 | 35.0 | 0.194 | E | -82.8 | 129.5 | 35.0 | 0.194 | 0.0 |
HOH |
4.795 |
NE2 |
O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:324 | A:324 | 36.0 | 0.2 | E | -96.9 | 126.6 | 36.0 | 0.2 | 0.0 |
HOH |
2.766 |
OE1 |
O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | GLN | A:324 | A:324 | 36.0 | 0.2 | E | -98.2 | 129.8 | 36.0 | 0.2 | 0.0 | ||||||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:324 | A:324 | 40.0 | 0.222 | E | -94.9 | 125.0 | 40.0 | 0.222 | 0.0 |
HOH |
5.154 |
NE2 |
O |
||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:324 | A:324 | 38.0 | 0.211 | E | -94.8 | 120.8 | 38.0 | 0.211 | 0.0 |
HOH |
7.684 |
O |
O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLN | A:324 | A:324 | 33.0 | 0.183 | E | -100.7 | 123.9 | 33.0 | 0.183 | 0.0 |
UNL HOH |
9.783 3.699 |
O C |
O O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | GLN | A:367 | A:367 | 39.0 | 0.217 | E | -91.4 | 128.5 | |