Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 235311 | . | C | A | CCDS3853.1:NM_004168.2:c.1117Cca>Aca_NP_004159.2:p.373P>T | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | PRO | A:341 | A:373 | 91.0 | 0.628 | H | -63.1 | -30.3 | 91.0 | 0.628 | 0.0 | ||||||
| PRO | C:341 | C:373 | 86.0 | 0.593 | H | -64.8 | -20.1 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | PRO | A:373 | A:331 | 77.0 | 0.531 | H | -50.2 | -39.4 | 77.0 | 0.531 | 0.0 | ||||||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | PRO | A:373 | A:331 | 90.0 | 0.621 | T | -50.0 | -27.8 | 90.0 | 0.621 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | PRO | A:331 | A:331 | 79.0 | 0.545 | T | -43.2 | -33.1 | 79.0 | 0.545 | 0.0 |
HOH |
6.650 |
O |
O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | PRO | A:331 | A:331 | 79.0 | 0.545 | T | -43.6 | -36.8 | 79.0 | 0.545 | 0.0 | ||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | PRO | A:331 | A:331 | 78.0 | 0.538 | H | -58.7 | -38.2 | 78.0 | 0.538 | 0.0 | ||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | PRO | A:331 | A:331 | 81.0 | 0.559 | H | -51.9 | -38.9 | 81.0 | 0.559 | 0.0 | ||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | PRO | A:331 | A:331 | 78.0 | 0.538 | H | -55.6 | -39.1 | 78.0 | 0.538 | 0.0 | ||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | PRO | A:331 | A:331 | 91.0 | 0.628 | H | -62.8 | -33.7 | 91.0 | 0.628 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | PRO | A:331 | A:331 | 75.0 | 0.517 | H | -51.0 | -38.4 | 75.0 | 0.517 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | PRO | A:331 | A:331 | 83.0 | 0.572 | H | -62.2 | -22.2 | 83.0 | 0.572 | 0.0 | ||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | PRO | A:331 | A:331 | 83.0 | 0.572 | H | -61.0 | -29.3 | 83.0 | 0.572 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | PRO | A:331 | A:331 | 82.0 | 0.566 | H | -64.7 | -23.7 | 82.0 | 0.566 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | PRO | A:331 | A:331 | 74.0 | 0.51 | H | -67.1 | -16.9 | 74.0 | 0.51 | 0.0 | ||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | PRO | A:331 | A:331 | 92.0 | 0.634 | H | -61.4 | -33.6 | 92.0 | 0.634 | 0.0 | ||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | PRO | A:331 | A:331 | 86.0 | 0.593 | T | -63.0 | -40.3 | 86.0 | 0.593 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | PRO | A:331 | A:331 | 76.0 | 0.524 | H | -57.7 | -38.2 | 76.0 | 0.524 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | PRO | A:331 | A:331 | 101.0 | 0.697 | H | -54.1 | -48.9 | 101.0 | 0.697 | 0.0 | ||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | PRO | A:331 | A:331 | 75.0 | 0.517 | H | -67.3 | -23.8 | 75.0 | 0.517 | 0.0 | ||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | PRO | A:331 | A:331 | 72.0 | 0.497 | H | -58.8 | -36.2 | 72.0 | 0.497 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | PRO | A:331 | A:331 | 73.0 | 0.503 | H | -53.1 | -42.8 | 73.0 | 0.503 | 0.0 | ||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | PRO | A:331 | A:331 | 82.0 | 0.566 | T | -64.9 | -35.2 | 82.0 | 0.566 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | PRO | A:331 | A:331 | 73.0 | 0.503 | H | -59.2 | -28.5 | 73.0 | 0.503 | 0.0 |
HOH |
9.057 |
C |
O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | PRO | A:331 | A:331 | 72.0 | 0.497 | H | -65.5 | -28.5 | 72.0 | 0.497 | 0.0 |
HOH |
9.544 |
C |
O |
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| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | PRO | A:330 | A:330 | 89.0 | 0.614 | H | -63.8 | -31.7 | 89.0 | 0.614 | 0.0 |
UNL UNL HOH |
4.017 4.948 2.657 |
C CD O |
O1 O1 O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | PRO | A:330 | A:330 | 94.0 | 0.648 | H | -61.6 | -34.4 | 94.0 | 0.648 | 0.0 |
HOH |
3.295 |
CG |
O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | PRO | A:330 | A:330 | 86.0 | 0.593 | H | -56.0 | -30.3 | 86.0 | 0.593 | 0.0 |
UNL UNL UNL HOH |
7.569 8.650 6.530 2.754 |
CD CB O O |
O16 O O O |
||
| PRO | E:330 | N:330 | 87.0 | 0.6 | H | -57.5 | -28.3 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | PRO | A:330 | A:330 | 88.0 | 0.607 | H | -56.0 | -28.1 | 88.0 | 0.607 | 0.0 |
HOH |
2.775 |
O |
O |
||
| PRO | E:330 | N:330 | 86.0 | 0.593 | H | -56.7 | -27.4 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | PRO | A:330 | A:330 | 95.0 | 0.655 | H | -59.4 | -31.7 | 95.0 | 0.655 | 0.0 |
UNL UNL UNL HOH |
5.580 3.699 4.399 3.690 |
CD O CD CD |
O1 O1 O1 O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | PRO | A:330 | A:330 | 88.0 | 0.607 | H | -55.9 | -24.4 | 88.0 | 0.607 | 0.0 |
UNL HOH |
9.003 2.616 |
CD O |
C2 O |
||
| PRO | E:330 | N:330 | 85.0 | 0.586 | H | -56.0 | -23.7 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | PRO | A:330 | A:330 | 89.0 | 0.614 | H | -58.0 | -28.3 | 89.0 | 0.614 | 0.0 |
UNL HOH |
8.441 3.193 |
O CD |
O1 O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | PRO | A:330 | A:330 | 91.0 | 0.628 | H | -66.9 | -26.6 | 91.0 | 0.628 | 0.0 |
UNL HOH |
8.310 4.334 |
O CD |
O1 O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | PRO | A:330 | A:330 | 91.0 | 0.628 | H | -57.9 | -31.5 | 91.0 | 0.628 | 0.0 |
UNL HOH |
8.548 2.743 |
O O |
O1 O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | PRO | A:330 | A:330 | 90.0 | 0.621 | H | -62.0 | -23.2 | 90.0 | 0.621 | 0.0 |
UNL UNL HOH |
8.376 2.726 8.419 |
O O O |
O1 N1 O |
||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | PRO | A:330 | A:330 | 92.0 | 0.634 | H | -66.1 | -30.3 | 92.0 | 0.634 | 0.0 |
UNL HOH |
8.564 6.577 |
O O |
O1 O |
||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | PRO | A:330 | A:330 | 93.0 | 0.641 | H | -69.2 | -28.6 | 93.0 | 0.641 | 0.0 |
UNL HOH |
8.325 3.321 |
O CD |
O1 O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | PRO | A:330 | A:330 | 90.0 | 0.621 | H | -61.4 | -27.3 | 90.0 | 0.621 | 0.0 |
UNL HOH |
8.530 2.650 |
O O |
O1 O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | PRO | A:373 | A:373 | 86.0 | 0.593 | H | -55.6 | -32.7 | |