Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 235317 . C A CCDS3853.1:NM_004168.2:c.1123Cag>Aag_NP_004159.2:p.375Q>K Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 GLN A:343 A:375 61.0 0.339 I -70.8 -33.4 61.0 0.339 0.0
GLN C:343 C:375 72.0 0.4 H -69.4 -39.8 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 GLN A:375 A:333 45.0 0.25 H -62.5 -49.4 45.0 0.25 0.0
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 GLN A:375 A:333 69.0 0.383 H -73.8 -19.2 69.0 0.383 0.0
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 GLN A:333 A:333 60.0 0.333 H -62.7 -35.0 60.0 0.333 0.0 HOH
 6.345
 O
 O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 GLN A:333 A:333 59.0 0.328 H -60.2 -37.9 59.0 0.328 0.0
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:333 A:333 45.0 0.25 H -70.5 -45.7 45.0 0.25 0.0
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:333 A:333 48.0 0.267 H -67.6 -41.2 48.0 0.267 0.0
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:333 A:333 52.0 0.289 H -70.5 -47.9 52.0 0.289 0.0
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:333 A:333 55.0 0.306 H -73.0 -35.3 55.0 0.306 0.0
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:333 A:333 45.0 0.25 H -67.1 -41.0 45.0 0.25 0.0
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:333 A:333 65.0 0.361 H -99.6 -16.9 65.0 0.361 0.0
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:333 A:333 64.0 0.356 H -77.3 -39.4 64.0 0.356 0.0
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:333 A:333 51.0 0.283 H -81.8 -40.0 51.0 0.283 0.0
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:333 A:333 55.0 0.306 H -81.7 -32.2 55.0 0.306 0.0
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:333 A:333 47.0 0.261 H -70.3 -40.5 47.0 0.261 0.0
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:333 A:333 52.0 0.289 H -74.3 -34.2 52.0 0.289 0.0
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:333 A:333 51.0 0.283 H -76.5 -44.3 51.0 0.283 0.0
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:333 A:333 54.0 0.3 H -69.2 -35.5 54.0 0.3 0.0
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:333 A:333 62.0 0.344 H -79.5 -34.9 62.0 0.344 0.0
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:333 A:333 69.0 0.383 H -93.9 -26.5 69.0 0.383 0.0
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:333 A:333 53.0 0.294 H -77.7 -41.1 53.0 0.294 0.0
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLN A:333 A:333 58.0 0.322 H -81.6 -29.1 58.0 0.322 0.0
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLN A:333 A:333 54.0 0.3 H -61.8 -45.6 54.0 0.3 0.0 HOH
 6.494
 O
 O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLN A:333 A:333 60.0 0.333 H -65.5 -43.9 60.0 0.333 0.0 HOH
 3.156
 NE2
 O
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 GLN A:332 A:332 45.0 0.25 H -64.0 -42.2 45.0 0.25 0.0 UNL
UNL
HOH
 6.184
7.349
2.868
 N
OE1
OE1
 O1
O1
O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 GLN A:332 A:332 44.0 0.244 H -70.9 -41.1 44.0 0.244 0.0 HOH
 2.864
 OE1
 O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 GLN A:332 A:332 53.0 0.294 H -70.2 -36.5 53.0 0.294 0.0 UNL
UNL
UNL
HOH
 8.955
8.999
9.766
3.492
 NE2
C
N
NE2
 C3
O
O
O
GLN E:332 N:332 52.0 0.289 H -72.5 -37.0 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLN A:332 A:332 53.0 0.294 H -68.1 -38.9 53.0 0.294 0.0 HOH
 2.961
 OE1
 O
GLN E:332 N:332 51.0 0.283 H -67.4 -39.8 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLN A:332 A:332 48.0 0.267 H -64.7 -35.6 48.0 0.267 0.0 UNL
UNL
UNL
HOH
 9.270
5.805
7.675
3.016
 OE1
N
OE1
OE1
 O1
O1
O1
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 GLN A:332 A:332 55.0 0.306 H -70.2 -35.0 55.0 0.306 0.0 UNL
HOH
 9.115
2.599
 OE1
OE1
 O6
O
GLN E:332 N:332 53.0 0.294 H -67.9 -42.1 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:332 A:332 49.0 0.272 H -60.4 -48.2 49.0 0.272 0.0 UNL
HOH
 7.808
3.824
 O
NE2
 O1
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:332 A:332 53.0 0.294 H -65.2 -36.2 53.0 0.294 0.0 UNL
UNL
HOH
 8.132
9.535
6.512
 O
O
NE2
 O1
N3
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:332 A:332 50.0 0.278 H -68.9 -40.6 50.0 0.278 0.0 UNL
HOH
 7.935
3.862
 O
NE2
 O1
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 GLN A:332 A:332 52.0 0.289 H -64.8 -43.6 52.0 0.289 0.0 UNL
UNL
HOH
 8.057
6.009
6.697
 O
C
O
 O1
N1
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:332 A:332 50.0 0.278 H -67.0 -43.3 50.0 0.278 0.0 UNL
HOH
 8.323
6.591
 O
O
 O1
O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:332 A:332 57.0 0.317 H -66.9 -37.6 57.0 0.317 0.0 UNL
UNL
UNL
HOH
 8.321
6.482
5.991
5.070
 O
NE2
NE2
N
 O1
O
O
O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLN A:332 A:332 51.0 0.283 H -67.2 -43.1 51.0 0.283 0.0 UNL
HOH
 7.870
3.748
 O
NE2
 O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 GLN A:375 A:375 55.0 0.306 H -65.8 -42.9