Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 235345 | . | C | A | CCDS3853.1:NM_004168.2:c.1151tCa>tAa_NP_004159.2:p.384S>* | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | SER | A:352 | A:384 | 36.0 | 0.313 | H | -68.9 | -41.4 | 36.0 | 0.313 | 0.0 | ||||||
| SER | C:352 | C:384 | 44.0 | 0.383 | H | -67.3 | -37.8 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | SER | A:384 | A:342 | 26.0 | 0.226 | H | -50.5 | -43.6 | 26.0 | 0.226 | 0.0 | ||||||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | SER | A:384 | A:342 | 28.0 | 0.243 | H | -64.2 | -51.9 | 28.0 | 0.243 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | SER | A:342 | A:342 | 32.0 | 0.278 | H | -58.4 | -44.9 | 32.0 | 0.278 | 0.0 |
HOH |
2.383 |
O |
O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | SER | A:342 | A:342 | 32.0 | 0.278 | H | -53.4 | -45.5 | 32.0 | 0.278 | 0.0 | ||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | SER | A:342 | A:342 | 27.0 | 0.235 | H | -56.1 | -47.8 | 27.0 | 0.235 | 0.0 | ||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | SER | A:342 | A:342 | 24.0 | 0.209 | H | -49.6 | -42.0 | 24.0 | 0.209 | 0.0 | ||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | SER | A:342 | A:342 | 30.0 | 0.261 | H | -59.9 | -39.5 | 30.0 | 0.261 | 0.0 | ||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | SER | A:342 | A:342 | 27.0 | 0.235 | H | -63.6 | -43.4 | 27.0 | 0.235 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | SER | A:342 | A:342 | 28.0 | 0.243 | H | -59.1 | -34.3 | 28.0 | 0.243 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | SER | A:342 | A:342 | 17.0 | 0.148 | H | -65.9 | -36.2 | 17.0 | 0.148 | 0.0 | ||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | SER | A:342 | A:342 | 27.0 | 0.235 | H | -57.8 | -37.7 | 27.0 | 0.235 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | SER | A:342 | A:342 | 24.0 | 0.209 | H | -63.4 | -37.1 | 24.0 | 0.209 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | SER | A:342 | A:342 | 17.0 | 0.148 | H | -67.8 | -43.6 | 17.0 | 0.148 | 0.0 | ||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | SER | A:342 | A:342 | 19.0 | 0.165 | H | -70.1 | -28.2 | 19.0 | 0.165 | 0.0 | ||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | SER | A:342 | A:342 | 30.0 | 0.261 | H | -63.9 | -33.2 | 30.0 | 0.261 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | SER | A:342 | A:342 | 30.0 | 0.261 | H | -58.5 | -36.9 | 30.0 | 0.261 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | SER | A:342 | A:342 | 26.0 | 0.226 | H | -62.3 | -33.5 | 26.0 | 0.226 | 0.0 | ||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | SER | A:342 | A:342 | 31.0 | 0.27 | H | -62.1 | -36.0 | 31.0 | 0.27 | 0.0 | ||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | SER | A:342 | A:342 | 34.0 | 0.296 | H | -59.6 | -40.5 | 34.0 | 0.296 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | SER | A:342 | A:342 | 25.0 | 0.217 | H | -46.3 | -55.1 | 25.0 | 0.217 | 0.0 | ||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | SER | A:342 | A:342 | 18.0 | 0.157 | H | -69.5 | -27.5 | 18.0 | 0.157 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | SER | A:342 | A:342 | 29.0 | 0.252 | H | -62.4 | -40.6 | 29.0 | 0.252 | 0.0 |
HOH |
2.503 |
O |
O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | SER | A:342 | A:342 | 26.0 | 0.226 | H | -50.5 | -42.9 | 26.0 | 0.226 | 0.0 | ||||||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | SER | A:341 | A:341 | 29.0 | 0.252 | H | -59.8 | -46.8 | 29.0 | 0.252 | 0.0 |
UNL HOH |
9.485 2.746 |
OG O |
O1 O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | SER | A:341 | A:341 | 28.0 | 0.243 | H | -55.7 | -46.0 | 28.0 | 0.243 | 0.0 |
HOH |
2.932 |
O |
O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | SER | A:341 | A:341 | 30.0 | 0.261 | H | -58.9 | -45.9 | 30.0 | 0.261 | 0.0 |
UNL UNL HOH |
4.648 4.196 2.792 |
O CB O |
O O O |
||
| SER | E:341 | N:341 | 30.0 | 0.261 | H | -60.5 | -45.2 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | SER | A:341 | A:341 | 30.0 | 0.261 | H | -60.5 | -43.6 | 30.0 | 0.261 | 0.0 |
HOH |
2.767 |
OG |
O |
||
| SER | E:341 | N:341 | 31.0 | 0.27 | H | -60.0 | -44.0 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | SER | A:341 | A:341 | 31.0 | 0.27 | H | -64.2 | -40.0 | 31.0 | 0.27 | 0.0 |
UNL HOH |
9.456 2.658 |
OG O |
O1 O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | SER | A:341 | A:341 | 31.0 | 0.27 | H | -58.1 | -42.8 | 31.0 | 0.27 | 0.0 |
HOH |
2.765 |
OG |
O |
||
| SER | E:341 | N:341 | 31.0 | 0.27 | H | -59.6 | -43.0 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | SER | A:341 | A:341 | 31.0 | 0.27 | H | -55.8 | -46.6 | 31.0 | 0.27 | 0.0 |
UNL HOH |
8.071 2.542 |
CB O |
C1 O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | SER | A:341 | A:341 | 32.0 | 0.278 | H | -65.4 | -38.1 | 32.0 | 0.278 | 0.0 |
UNL UNL UNL HOH |
7.864 6.252 9.149 2.420 |
CB N C O |
O1 N3 C O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | SER | A:341 | A:341 | 30.0 | 0.261 | H | -69.5 | -42.6 | 30.0 | 0.261 | 0.0 |
UNL UNL HOH |
8.575 9.010 2.458 |
CB N O |
C2 O O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | SER | A:341 | A:341 | 32.0 | 0.278 | H | -60.1 | -44.5 | 32.0 | 0.278 | 0.0 |
UNL UNL HOH |
8.315 3.141 3.614 |
CB OG CB |
C2 N3 O |
||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | SER | A:341 | A:341 | 28.0 | 0.243 | H | -58.9 | -47.5 | 28.0 | 0.243 | 0.0 |
UNL UNL HOH |
8.272 8.055 4.020 |
CB N CB |
C2 O O |
||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | SER | A:341 | A:341 | 29.0 | 0.252 | H | -63.1 | -40.2 | 29.0 | 0.252 | 0.0 |
UNL UNL HOH |
8.150 5.983 4.001 |
CB N CB |
C2 O O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | SER | A:341 | A:341 | 29.0 | 0.252 | H | -63.1 | -44.8 | 29.0 | 0.252 | 0.0 |
UNL UNL HOH |
8.556 8.666 2.491 |
CB N O |
C2 O O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | SER | A:384 | A:384 | 29.0 | 0.252 | H | -63.3 | -44.4 | |