Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 235428 | . | G | A | CCDS3853.1:NM_004168.2:c.1234Ggc>Agc_NP_004159.2:p.412G>S | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | GLY | A:380 | A:412 | 1.0 | 0.013 | B | 150.8 | -142.4 | 1.0 | 0.013 | 0.0 |
K HOH |
4.519 3.842 |
N CA |
K O |
||
| GLY | C:380 | C:412 | 0.0 | 0.0 | B | 139.0 | -150.0 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | GLY | A:412 | A:370 | 1.0 | 0.013 | B | 162.5 | -157.9 | 1.0 | 0.013 | 0.0 | ||||||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | GLY | A:412 | A:370 | 0.0 | 0.0 | B | 158.8 | -150.5 | 0.0 | 0.0 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | GLY | A:370 | A:370 | 0.0 | 0.0 | B | 165.4 | -151.1 | 0.0 | 0.0 | 0.0 |
HOH |
3.171 |
CA |
O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | GLY | A:370 | A:370 | 0.0 | 0.0 | B | 167.5 | -145.8 | 0.0 | 0.0 | 0.0 | ||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:370 | A:370 | 1.0 | 0.013 | B | 154.7 | -147.6 | 1.0 | 0.013 | 0.0 | ||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:370 | A:370 | 0.0 | 0.0 | B | 166.1 | -143.5 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:370 | A:370 | 1.0 | 0.013 | B | 153.7 | -152.6 | 1.0 | 0.013 | 0.0 | ||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:370 | A:370 | 0.0 | 0.0 | B | 153.3 | -150.4 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:370 | A:370 | 1.0 | 0.013 | B | 164.7 | -125.5 | 1.0 | 0.013 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:370 | A:370 | 0.0 | 0.0 | B | 149.9 | -126.2 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:370 | A:370 | 1.0 | 0.013 | B | 145.9 | -144.9 | 1.0 | 0.013 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:370 | A:370 | 0.0 | 0.0 | B | 144.3 | -131.4 | 0.0 | 0.0 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:370 | A:370 | 1.0 | 0.013 | -166.5 | -118.8 | 1.0 | 0.013 | 0.0 | |||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:370 | A:370 | 0.0 | 0.0 | B | 157.7 | -144.0 | 0.0 | 0.0 | 0.0 | ||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:370 | A:370 | 1.0 | 0.013 | B | 157.0 | -146.5 | 1.0 | 0.013 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:370 | A:370 | 1.0 | 0.013 | B | 150.7 | -146.3 | 1.0 | 0.013 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:370 | A:370 | 0.0 | 0.0 | B | 151.1 | -150.5 | 0.0 | 0.0 | 0.0 | ||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:370 | A:370 | 1.0 | 0.013 | B | 147.7 | -131.3 | 1.0 | 0.013 | 0.0 | ||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:370 | A:370 | 0.0 | 0.0 | B | 159.8 | -139.7 | 0.0 | 0.0 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:370 | A:370 | 0.0 | 0.0 | B | 150.0 | -142.9 | 0.0 | 0.0 | 0.0 | ||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | GLY | A:370 | A:370 | 0.0 | 0.0 | B | 169.0 | -124.2 | 0.0 | 0.0 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | GLY | A:370 | A:370 | 1.0 | 0.013 | B | 166.3 | -155.7 | 1.0 | 0.013 | 0.0 |
HOH |
4.193 |
N |
O |
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| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | GLY | A:370 | A:370 | 1.0 | 0.013 | B | 171.6 | -138.1 | 1.0 | 0.013 | 0.0 | ||||||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLY | A:369 | A:369 | 1.0 | 0.013 | B | 165.3 | -158.4 | 1.0 | 0.013 | 0.0 |
HOH |
3.759 |
CA |
O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLY | A:369 | A:369 | 0.0 | 0.0 | B | -178.3 | -157.8 | 0.0 | 0.0 | 0.0 |
HOH |
3.388 |
CA |
O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | GLY | A:369 | A:369 | 1.0 | 0.013 | B | 169.5 | -144.6 | 1.0 | 0.013 | 0.0 |
K HOH |
4.669 3.833 |
N CA |
K O |
||
| GLY | E:369 | N:369 | 0.0 | 0.0 | B | 165.5 | -146.8 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | GLY | A:369 | A:369 | 1.0 | 0.013 | B | 164.9 | -153.1 | 1.0 | 0.013 | 0.0 |
K HOH |
4.617 3.164 |
N CA |
K O |
||
| GLY | E:369 | N:369 | 1.0 | 0.013 | B | 166.8 | -150.8 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | GLY | A:369 | A:369 | 1.0 | 0.013 | B | 167.3 | -169.6 | 1.0 | 0.013 | 0.0 |
K HOH |
4.454 3.377 |
N CA |
K O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | GLY | A:369 | A:369 | 1.0 | 0.013 | B | 164.9 | -149.2 | 1.0 | 0.013 | 0.0 |
K HOH |
4.654 2.883 |
N CA |
K O |
||
| GLY | E:369 | N:369 | 0.0 | 0.0 | B | 164.1 | -150.1 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:369 | A:369 | 0.0 | 0.0 | B | 179.0 | -156.0 | 0.0 | 0.0 | 0.0 |
K HOH |
4.631 3.612 |
N CA |
K O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:369 | A:369 | 2.0 | 0.027 | B | 165.2 | -160.5 | 2.0 | 0.027 | 0.0 |
K UNL UNL HOH |
4.563 6.127 6.550 3.918 |
N N O CA |
K N3 C2 O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:369 | A:369 | 1.0 | 0.013 | B | 174.5 | -154.7 | 1.0 | 0.013 | 0.0 |
K UNL HOH |
4.542 6.017 3.847 |
N N CA |
K N3 O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | GLY | A:369 | A:369 | 1.0 | 0.013 | B | 150.9 | -160.6 | 1.0 | 0.013 | 0.0 |
K UNL UNL HOH |
4.660 6.290 8.909 7.778 |
N N CA CA |
K N3 O O |
||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:369 | A:369 | 0.0 | 0.0 | B | 152.4 | -151.7 | 0.0 | 0.0 | 0.0 |
K HOH |
4.682 7.270 |
N CA |
K O |
||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:369 | A:369 | 0.0 | 0.0 | B | 164.7 | -143.7 | 0.0 | 0.0 | 0.0 |
K UNL HOH |
4.531 6.437 3.450 |
N N CA |
K N3 O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | GLY | A:369 | A:369 | 1.0 | 0.013 | B | 165.0 | -151.5 | 1.0 | 0.013 | 0.0 |
K UNL HOH |
4.598 6.374 3.833 |
N N CA |
K N3 O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | GLY | A:412 | A:412 | 0.0 | 0.0 | B | 177.3 | -151.6 | |