Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 235438 | . | C | A | CCDS3853.1:NM_004168.2:c.1244aCc>aAc_NP_004159.2:p.415T>N | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | THR | A:383 | A:415 | 2.0 | 0.014 | B | -137.4 | 168.6 | 2.0 | 0.014 | 0.0 |
K HOH |
8.792 3.074 |
OG1 OG1 |
K O |
||
| THR | C:383 | C:415 | 3.0 | 0.021 | B | -135.2 | 172.6 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | THR | A:415 | A:373 | 6.0 | 0.043 | B | -148.2 | 150.9 | 6.0 | 0.043 | 0.0 | ||||||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | THR | A:415 | A:373 | 7.0 | 0.05 | B | -145.5 | 144.5 | 7.0 | 0.05 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | THR | A:373 | A:373 | 5.0 | 0.036 | B | -129.7 | 164.9 | 5.0 | 0.036 | 0.0 |
HOH |
2.631 |
O |
O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | THR | A:373 | A:373 | 6.0 | 0.043 | B | -132.2 | 159.1 | 6.0 | 0.043 | 0.0 | ||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:373 | A:373 | 6.0 | 0.043 | B | -150.4 | 147.2 | 6.0 | 0.043 | 0.0 | ||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:373 | A:373 | 6.0 | 0.043 | B | -142.6 | 144.7 | 6.0 | 0.043 | 0.0 | ||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:373 | A:373 | 7.0 | 0.05 | B | -149.5 | 143.1 | 7.0 | 0.05 | 0.0 | ||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:373 | A:373 | 5.0 | 0.036 | B | -145.0 | 145.6 | 5.0 | 0.036 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:373 | A:373 | 6.0 | 0.043 | B | -146.5 | 141.4 | 6.0 | 0.043 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:373 | A:373 | 5.0 | 0.036 | B | -134.6 | 131.3 | 5.0 | 0.036 | 0.0 | ||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:373 | A:373 | 6.0 | 0.043 | B | -138.2 | 142.1 | 6.0 | 0.043 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:373 | A:373 | 3.0 | 0.021 | B | -143.1 | 142.1 | 3.0 | 0.021 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:373 | A:373 | 4.0 | 0.029 | B | -136.8 | 134.5 | 4.0 | 0.029 | 0.0 | ||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:373 | A:373 | 1.0 | 0.007 | B | -148.5 | 138.7 | 1.0 | 0.007 | 0.0 | ||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:373 | A:373 | 4.0 | 0.029 | B | -142.2 | 147.1 | 4.0 | 0.029 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:373 | A:373 | 6.0 | 0.043 | B | -154.1 | 149.5 | 6.0 | 0.043 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:373 | A:373 | 2.0 | 0.014 | B | -147.8 | 150.0 | 2.0 | 0.014 | 0.0 | ||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:373 | A:373 | 8.0 | 0.057 | B | -149.4 | 149.3 | 8.0 | 0.057 | 0.0 | ||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:373 | A:373 | 6.0 | 0.043 | B | -151.8 | 138.3 | 6.0 | 0.043 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:373 | A:373 | 7.0 | 0.05 | B | -143.1 | 161.4 | 7.0 | 0.05 | 0.0 | ||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | THR | A:373 | A:373 | 5.0 | 0.036 | E | -138.3 | 129.6 | 5.0 | 0.036 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | THR | A:373 | A:373 | 6.0 | 0.043 | B | -142.6 | 140.8 | 6.0 | 0.043 | 0.0 |
HOH |
5.938 |
CG2 |
O |
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| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | THR | A:373 | A:373 | 5.0 | 0.036 | B | -146.7 | 147.5 | 5.0 | 0.036 | 0.0 |
HOH |
6.812 |
C |
O |
||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | THR | A:372 | A:372 | 3.0 | 0.021 | B | -140.4 | 166.3 | 3.0 | 0.021 | 0.0 |
HOH |
2.857 |
OG1 |
O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | THR | A:372 | A:372 | 2.0 | 0.014 | B | -127.5 | 178.3 | 2.0 | 0.014 | 0.0 |
HOH |
2.653 |
O |
O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | THR | A:372 | A:372 | 2.0 | 0.014 | B | -130.6 | 166.2 | 2.0 | 0.014 | 0.0 |
K HOH |
9.194 2.914 |
CG2 O |
K O |
||
| THR | E:372 | N:372 | 3.0 | 0.021 | B | -127.1 | 166.6 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | THR | A:372 | A:372 | 3.0 | 0.021 | B | -137.6 | 169.6 | 3.0 | 0.021 | 0.0 |
K HOH |
9.266 2.741 |
OG1 O |
K O |
||
| THR | E:372 | N:372 | 2.0 | 0.014 | B | -138.4 | 170.2 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | THR | A:372 | A:372 | 2.0 | 0.014 | B | -139.9 | 174.4 | 2.0 | 0.014 | 0.0 |
K HOH |
9.413 2.935 |
CG2 O |
K O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | THR | A:372 | A:372 | 2.0 | 0.014 | B | -138.1 | 168.6 | 2.0 | 0.014 | 0.0 |
K HOH |
9.135 2.933 |
CG2 OG1 |
K O |
||
| THR | E:372 | N:372 | 3.0 | 0.021 | B | -137.3 | 169.7 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | THR | A:372 | A:372 | 2.0 | 0.014 | B | -127.6 | 169.5 | 2.0 | 0.014 | 0.0 |
K HOH |
9.223 2.842 |
CG2 OG1 |
K O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | THR | A:372 | A:372 | 3.0 | 0.021 | B | -134.0 | 169.0 | 3.0 | 0.021 | 0.0 |
K UNL UNL UNL UNL HOH |
8.996 6.624 3.948 9.246 8.107 2.421 |
OG1 OG1 O O CG2 O |
K N1 N3 O2 N3 O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | THR | A:372 | A:372 | 2.0 | 0.014 | B | -132.7 | 173.5 | 2.0 | 0.014 | 0.0 |
K UNL HOH |
9.160 6.716 3.124 |
CG2 OG1 OG1 |
K N1 O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | THR | A:372 | A:372 | 2.0 | 0.014 | B | -131.3 | 173.5 | 2.0 | 0.014 | 0.0 |
K UNL UNL HOH |
9.140 6.689 9.669 2.993 |
CG2 OG1 CG2 O |
K N1 O O |
||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | THR | A:372 | A:372 | 2.0 | 0.014 | B | -125.8 | -175.7 | 2.0 | 0.014 | 0.0 |
K HOH |
9.062 3.075 |
CG2 O |
K O |
||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | THR | A:372 | A:372 | 4.0 | 0.029 | B | -128.3 | 173.0 | 4.0 | 0.029 | 0.0 |
K UNL HOH |
8.966 6.615 3.017 |
OG1 OG1 O |
K N1 O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | THR | A:372 | A:372 | 2.0 | 0.014 | B | -127.7 | 171.9 | 2.0 | 0.014 | 0.0 |
K UNL HOH |
9.202 6.662 2.925 |
CG2 OG1 O |
K N1 O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | THR | A:415 | A:415 | 5.0 | 0.036 | B | -130.9 | 159.0 | |