Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr5 | 236590 | . | C | A | CCDS3853.1:NM_004168.2:c.1308taC>taA_NP_004159.2:p.436Y>* | Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA. |
|---|---|---|---|---|---|---|---|
|
|
|
|
|
PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6vax | 1 | P31040 | 100.0 | 0.0 |
X-RAY |
2020-08-26 | TYR | A:404 | A:436 | 7.0 | 0.03 | E | -128.4 | 157.8 | 7.0 | 0.03 | 0.0 |
HOH |
2.841 |
OH |
O |
||
| TYR | C:404 | C:436 | 5.0 | 0.022 | E | -130.4 | 160.0 | NA | NA | NA | |||||||||||||
| 4ytp | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2015-08-05 | TYR | A:436 | A:394 | 5.0 | 0.022 | E | -123.6 | 177.1 | 5.0 | 0.022 | 0.0 |
HOH |
9.214 |
CE2 |
O |
||
| 4yxd | 1 | Q0QF01 | 94.58 | 0.0 |
X-RAY |
2016-03-02 | TYR | A:436 | A:394 | 6.0 | 0.026 | E | -130.2 | 166.2 | 6.0 | 0.026 | 0.0 | ||||||
| 1zoy | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2005-07-12 | TYR | A:394 | A:394 | 7.0 | 0.03 | E | -129.4 | 162.8 | 7.0 | 0.03 | 0.0 |
HOH |
3.928 |
CE1 |
O |
||
| 1zp0 | 1 | ? | 96.3 | 0.0 |
X-RAY |
2005-07-12 | TYR | A:394 | A:394 | 8.0 | 0.035 | E | -127.0 | 165.4 | 8.0 | 0.035 | 0.0 | ||||||
| 3abv | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:394 | A:394 | 4.0 | 0.017 | E | -126.0 | 152.1 | 4.0 | 0.017 | 0.0 | ||||||
| 3ae1 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:394 | A:394 | 7.0 | 0.03 | E | -126.4 | 156.0 | 7.0 | 0.03 | 0.0 | ||||||
| 3ae2 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:394 | A:394 | 6.0 | 0.026 | E | -128.4 | 155.3 | 6.0 | 0.026 | 0.0 | ||||||
| 3ae3 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:394 | A:394 | 6.0 | 0.026 | E | -131.2 | 161.0 | 6.0 | 0.026 | 0.0 | ||||||
| 3ae4 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:394 | A:394 | 11.0 | 0.048 | E | -128.1 | 162.0 | 11.0 | 0.048 | 0.0 | ||||||
| 3ae5 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:394 | A:394 | 12.0 | 0.052 | E | -134.3 | 158.9 | 12.0 | 0.052 | 0.0 | ||||||
| 3ae6 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:394 | A:394 | 11.0 | 0.048 | E | -131.3 | 158.3 | 11.0 | 0.048 | 0.0 | ||||||
| 3ae7 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:394 | A:394 | 15.0 | 0.065 | E | -137.1 | 158.0 | 15.0 | 0.065 | 0.0 | ||||||
| 3ae8 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:394 | A:394 | 8.0 | 0.035 | E | -131.8 | 159.2 | 8.0 | 0.035 | 0.0 | ||||||
| 3ae9 | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:394 | A:394 | 9.0 | 0.039 | E | -125.9 | 157.0 | 9.0 | 0.039 | 0.0 | ||||||
| 3aea | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:394 | A:394 | 8.0 | 0.035 | E | -125.1 | 159.1 | 8.0 | 0.035 | 0.0 | ||||||
| 3aeb | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:394 | A:394 | 6.0 | 0.026 | E | -125.5 | 162.3 | 6.0 | 0.026 | 0.0 | ||||||
| 3aec | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:394 | A:394 | 10.0 | 0.043 | E | -133.6 | 155.2 | 10.0 | 0.043 | 0.0 | ||||||
| 3aed | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:394 | A:394 | 8.0 | 0.035 | E | -128.6 | 158.9 | 8.0 | 0.035 | 0.0 | ||||||
| 3aee | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:394 | A:394 | 6.0 | 0.026 | E | -133.3 | 158.6 | 6.0 | 0.026 | 0.0 | ||||||
| 3aef | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:394 | A:394 | 10.0 | 0.043 | E | -124.9 | 160.9 | 10.0 | 0.043 | 0.0 | ||||||
| 3aeg | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-02-09 | TYR | A:394 | A:394 | 8.0 | 0.035 | E | -130.9 | 161.9 | 8.0 | 0.035 | 0.0 | ||||||
| 3sfd | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | TYR | A:394 | A:394 | 6.0 | 0.026 | E | -130.9 | 163.9 | 6.0 | 0.026 | 0.0 |
HOH |
4.125 |
CE1 |
O |
||
| 3sfe | 1 | Q0QF01 | 96.3 | 0.0 |
X-RAY |
2011-09-07 | TYR | A:394 | A:394 | 6.0 | 0.026 | E | -132.2 | 158.6 | 6.0 | 0.026 | 0.0 |
HOH |
4.219 |
CE1 |
O |
||
| 1yq3 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | TYR | A:393 | A:393 | 4.0 | 0.017 | E | -129.3 | 157.9 | 4.0 | 0.017 | 0.0 |
HOH |
2.937 |
OH |
O |
||
| 1yq4 | 1 | 50736125 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | TYR | A:393 | A:393 | 5.0 | 0.022 | E | -140.5 | 167.2 | 5.0 | 0.022 | 0.0 |
HOH |
2.856 |
OH |
O |
||
| 2fbw | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2005-12-20 | TYR | A:393 | A:393 | 4.0 | 0.017 | E | -123.1 | 160.7 | 4.0 | 0.017 | 0.0 |
UNL HOH |
7.385 2.471 |
CE2 OH |
O1 O |
||
| TYR | E:393 | N:393 | 5.0 | 0.022 | E | -125.1 | 160.1 | NA | NA | NA | |||||||||||||
| 2h88 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | TYR | A:393 | A:393 | 6.0 | 0.026 | E | -129.1 | 159.2 | 6.0 | 0.026 | 0.0 |
HOH |
2.748 |
OH |
O |
||
| TYR | E:393 | N:393 | 6.0 | 0.026 | E | -129.0 | 158.7 | NA | NA | NA | |||||||||||||
| 2h89 | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2006-06-20 | TYR | A:393 | A:393 | 7.0 | 0.03 | E | -130.7 | 160.5 | 7.0 | 0.03 | 0.0 |
HOH |
2.880 |
OH |
O |
||
| 2wqy | 1 | Q9YHT1 | 91.79 | 0.0 |
X-RAY |
2010-08-25 | TYR | A:393 | A:393 | 6.0 | 0.026 | E | -126.3 | 161.3 | 6.0 | 0.026 | 0.0 |
HOH |
2.680 |
OH |
O |
||
| TYR | E:393 | N:393 | 6.0 | 0.026 | E | -126.7 | 163.1 | NA | NA | NA | |||||||||||||
| 6myo | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | TYR | A:393 | A:393 | 5.0 | 0.022 | E | -126.1 | 167.4 | 5.0 | 0.022 | 0.0 |
UNL HOH |
8.379 2.565 |
CE2 OH |
O1 O |
||
| 6myp | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | TYR | A:393 | A:393 | 6.0 | 0.026 | E | -127.9 | 166.9 | 6.0 | 0.026 | 0.0 |
BCT UNL HOH |
8.214 3.668 2.360 |
CE2 CE1 OH |
O2 N2 O |
||
| 6myq | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | TYR | A:393 | A:393 | 4.0 | 0.017 | E | -131.9 | 155.7 | 4.0 | 0.017 | 0.0 |
HOH |
2.425 |
OH |
O |
||
| 6myr | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-10-16 | TYR | A:393 | A:393 | 5.0 | 0.022 | E | -131.8 | 161.1 | 5.0 | 0.022 | 0.0 |
UNL UNL HOH |
7.249 8.909 2.927 |
CE2 O OH |
O4 O O |
||
| 6mys | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | TYR | A:393 | A:393 | 7.0 | 0.03 | E | -131.5 | 165.9 | 7.0 | 0.03 | 0.0 |
UNL HOH |
9.896 3.123 |
CE2 OH |
O O |
||
| 6myt | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | TYR | A:393 | A:393 | 6.0 | 0.026 | E | -131.8 | 164.9 | 6.0 | 0.026 | 0.0 |
UNL HOH |
2.285 3.604 |
OH OH |
O O |
||
| 6myu | 1 | F1NPJ4 | 91.79 | 0.0 |
X-RAY |
2019-11-06 | TYR | A:393 | A:393 | 6.0 | 0.026 | E | -132.2 | 162.2 | 6.0 | 0.026 | 0.0 |
UNL HOH |
7.847 2.577 |
CE2 OH |
O O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p31040-f1 | 1 | P31040 | 100.0 | 0.0 | TYR | A:436 | A:436 | 7.0 | 0.03 | E | -129.5 | 156.4 | |