Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 236598 . G A CCDS3853.1:NM_004168.2:c.1316gGg>gAg_NP_004159.2:p.439G>E Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 GLY A:407 A:439 2.0 0.027 G 92.5 -159.7 2.0 0.027 0.0 FAD
K
HOH
 3.657
4.208
2.714
 CA
O
N
 O2P
K
O
GLY C:407 C:439 2.0 0.027 G 90.8 -162.6 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 GLY A:439 A:397 2.0 0.027 T 85.5 -152.0 2.0 0.027 0.0 FAD
 3.723
 CA
 O2P
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 GLY A:439 A:397 3.0 0.04 S 84.7 -164.2 3.0 0.04 0.0 FAD
 3.502
 CA
 O2P
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 GLY A:397 A:397 2.0 0.027 S 91.3 -161.7 2.0 0.027 0.0 FAD
HOH
 3.671
2.750
 CA
O
 O2P
O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 GLY A:397 A:397 3.0 0.04 S 90.6 -162.1 3.0 0.04 0.0 FAD
 3.648
 CA
 O2P
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:397 A:397 3.0 0.04 G 81.4 -153.4 3.0 0.04 0.0 FAD
 3.940
 CA
 O2P
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:397 A:397 2.0 0.027 T 86.0 -144.9 2.0 0.027 0.0 FAD
 3.696
 CA
 O2P
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:397 A:397 2.0 0.027 G 79.1 -157.3 2.0 0.027 0.0 FAD
 3.488
 CA
 O2P
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:397 A:397 3.0 0.04 S 88.3 -150.4 3.0 0.04 0.0 FAD
 3.654
 CA
 O2P
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:397 A:397 2.0 0.027 S 88.2 -157.9 2.0 0.027 0.0 FAD
 3.898
 CA
 O2P
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:397 A:397 2.0 0.027 S 108.1 -149.7 2.0 0.027 0.0 FAD
 4.190
 CA
 O2P
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:397 A:397 4.0 0.053 S 104.8 -152.4 4.0 0.053 0.0 FAD
 4.329
 CA
 O2P
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:397 A:397 2.0 0.027 S 100.7 -151.0 2.0 0.027 0.0 FAD
 4.255
 CA
 O2P
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:397 A:397 3.0 0.04 S 103.2 -155.1 3.0 0.04 0.0 FAD
 3.923
 CA
 O2P
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:397 A:397 3.0 0.04 S 89.1 -150.7 3.0 0.04 0.0 FAD
 3.619
 CA
 O2P
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:397 A:397 4.0 0.053 S 96.1 -146.0 4.0 0.053 0.0 FAD
 3.858
 CA
 O2P
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:397 A:397 4.0 0.053 S 94.4 -159.3 4.0 0.053 0.0 FAD
 3.825
 CA
 O2P
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:397 A:397 2.0 0.027 S 92.7 -150.9 2.0 0.027 0.0 FAD
 3.904
 CA
 O2P
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:397 A:397 3.0 0.04 S 99.7 -150.6 3.0 0.04 0.0 FAD
 3.685
 CA
 O2P
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:397 A:397 2.0 0.027 G 76.9 -151.0 2.0 0.027 0.0 FAD
 3.956
 CA
 O2P
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:397 A:397 2.0 0.027 G 78.5 -169.8 2.0 0.027 0.0 FAD
 3.355
 CA
 O2P
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:397 A:397 0.0 0.0 T 92.2 -143.8 0.0 0.0 0.0 FAD
 4.044
 CA
 O2P
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLY A:397 A:397 2.0 0.027 S 84.3 -161.1 2.0 0.027 0.0 FAD
HOH
 3.885
2.545
 CA
N
 O2P
O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLY A:397 A:397 2.0 0.027 S 85.7 -156.4 2.0 0.027 0.0 FAD
 3.738
 CA
 O2P
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 GLY A:396 A:396 2.0 0.027 G 87.2 -169.2 2.0 0.027 0.0 FAD
HOH
 3.687
2.823
 CA
N
 O2P
O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 GLY A:396 A:396 2.0 0.027 G 80.3 -172.0 2.0 0.027 0.0 FAD
HOH
 3.380
2.770
 CA
O
 O2P
O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 GLY A:396 A:396 2.0 0.027 G 83.8 -160.3 2.0 0.027 0.0 FAD
K
HOH
 3.467
4.265
2.934
 CA
O
O
 O2P
K
O
GLY E:396 N:396 3.0 0.04 G 85.5 -164.8 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLY A:396 A:396 2.0 0.027 G 84.9 -162.0 2.0 0.027 0.0 K
FAD
HOH
 4.426
3.596
3.052
 O
CA
N
 K
O2P
O
GLY E:396 N:396 2.0 0.027 G 84.8 -161.0 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLY A:396 A:396 3.0 0.04 G 84.0 -173.2 3.0 0.04 0.0 K
FAD
HOH
 4.755
3.560
2.778
 O
CA
O
 K
O2P
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 GLY A:396 A:396 3.0 0.04 G 91.4 -167.0 3.0 0.04 0.0 K
FAD
HOH
 4.335
3.505
2.837
 O
CA
O
 K
O2P
O
GLY E:396 N:396 3.0 0.04 G 91.6 -169.2 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLY A:396 A:396 1.0 0.013 G 85.4 -162.1 1.0 0.013 0.0 FAD
K
HOH
 3.526
4.304
2.950
 CA
O
O
 O2P
K
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLY A:396 A:396 1.0 0.013 S 93.8 -160.4 1.0 0.013 0.0 FAD
K
UNL
HOH
 3.496
4.382
5.466
2.605
 CA
O
O
O
 O2P
K
N1
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLY A:396 A:396 1.0 0.013 S 94.1 -160.0 1.0 0.013 0.0 FAD
K
UNL
HOH
 3.572
4.215
5.323
2.667
 CA
O
O
O
 O2P
K
N1
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 GLY A:396 A:396 2.0 0.027 G 79.0 -164.5 2.0 0.027 0.0 FAD
K
UNL
UNL
HOH
 3.528
4.258
5.569
3.248
6.510
 CA
O
O
CA
CA
 O2P
K
N1
O
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLY A:396 A:396 2.0 0.027 S 91.7 -160.9 2.0 0.027 0.0 FAD
K
HOH
 3.616
4.224
6.295
 CA
O
CA
 O2P
K
O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLY A:396 A:396 1.0 0.013 S 94.1 -159.8 1.0 0.013 0.0 FAD
K
UNL
UNL
UNL
HOH
 3.467
4.359
5.519
9.385
6.084
3.204
 CA
O
O
C
CA
C
 O2P
K
N1
O
O
O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLY A:396 A:396 1.0 0.013 G 78.8 -162.6 1.0 0.013 0.0 FAD
K
UNL
HOH
 3.598
4.327
5.479
2.999
 CA
O
O
O
 O2P
K
N1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 GLY A:439 A:439 1.0 0.013 G 70.9 -158.1