Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr5 236639 . G A CCDS3853.1:NM_004168.2:c.1357Ggg>Agg_NP_004159.2:p.453G>R Homo sapiens succinate dehydrogenase complex, subunit A, flavoprotein (Fp) (SDHA), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6vax 1 P31040 100.0 0.0 X-RAY
 2020-08-26 GLY A:421 A:453 9.0 0.12 T -69.0 147.4 9.0 0.12 0.0 FAD
OAA
HOH
 4.886
3.926
5.501
 C
CA
N
 O2
O5
O
GLY C:421 C:453 27.0 0.36 T -68.4 149.7 NA NA NA
4ytp 1 Q0QF01 94.58 0.0 X-RAY
 2015-08-05 GLY A:453 A:411 1.0 0.013 T -63.6 144.2 1.0 0.013 0.0 FAD
 5.045
 C
 O2
4yxd 1 Q0QF01 94.58 0.0 X-RAY
 2016-03-02 GLY A:453 A:411 0.0 0.0 T -50.3 128.7 0.0 0.0 0.0 FAD
 5.275
 C
 O2
1zoy 1 Q0QF01 96.3 0.0 X-RAY
 2005-07-12 GLY A:411 A:411 2.0 0.027 T -52.7 138.5 2.0 0.027 0.0 FAD
HOH
 4.751
3.367
 C
C
 O2
O
1zp0 1 ? 96.3 0.0 X-RAY
 2005-07-12 GLY A:411 A:411 2.0 0.027 T -51.0 137.0 2.0 0.027 0.0 FAD
3NP
 4.708
3.875
 C
CA
 O2
C2
3abv 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:411 A:411 1.0 0.013 T -64.2 129.1 1.0 0.013 0.0 FAD
MLI
 5.208
4.217
 C
C
 O2
O8
3ae1 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:411 A:411 0.0 0.0 T -56.5 143.8 0.0 0.0 0.0 FAD
MLI
 5.367
3.929
 C
CA
 O2
O7
3ae2 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:411 A:411 0.0 0.0 T -57.6 133.2 0.0 0.0 0.0 FAD
MLI
 5.117
4.160
 C
CA
 O2
O9
3ae3 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:411 A:411 1.0 0.013 T -58.2 133.3 1.0 0.013 0.0 FAD
 5.724
 C
 O2
3ae4 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:411 A:411 0.0 0.0 T -62.0 139.3 0.0 0.0 0.0 FAD
MLI
 5.289
4.322
 C
CA
 O2
O9
3ae5 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:411 A:411 1.0 0.013 T -62.1 116.0 1.0 0.013 0.0 FAD
MLI
 5.882
4.354
 C
C
 O2
O9
3ae6 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:411 A:411 1.0 0.013 T -57.8 135.1 1.0 0.013 0.0 FAD
 5.778
 C
 O2
3ae7 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:411 A:411 1.0 0.013 T -57.9 132.7 1.0 0.013 0.0 FAD
 6.034
 C
 O2
3ae8 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:411 A:411 3.0 0.04 T -57.4 126.6 3.0 0.04 0.0 FAD
 5.918
 C
 O2
3ae9 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:411 A:411 1.0 0.013 T -57.5 137.6 1.0 0.013 0.0 FAD
MLI
 5.518
5.305
 C
C
 O2
O6
3aea 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:411 A:411 1.0 0.013 T -58.3 129.2 1.0 0.013 0.0 FAD
MLI
 5.415
4.390
 C
C
 O2
O7
3aeb 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:411 A:411 1.0 0.013 T -59.8 139.7 1.0 0.013 0.0 FAD
MLI
 5.072
4.145
 C
CA
 O2
O8
3aec 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:411 A:411 0.0 0.0 T -58.4 133.5 0.0 0.0 0.0 FAD
 5.840
 C
 O2
3aed 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:411 A:411 2.0 0.027 T -59.5 129.2 2.0 0.027 0.0 FAD
MLI
 5.489
4.551
 C
CA
 O2
O9
3aee 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:411 A:411 1.0 0.013 T -59.9 137.8 1.0 0.013 0.0 FAD
 5.211
 C
 O2
3aef 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:411 A:411 0.0 0.0 T -66.7 134.7 0.0 0.0 0.0 FAD
HOH
 4.927
4.151
 C
CA
 O2
O
3aeg 1 Q0QF01 96.3 0.0 X-RAY
 2011-02-09 GLY A:411 A:411 0.0 0.0 T -65.1 113.5 0.0 0.0 0.0 FAD
 5.786
 C
 O2
3sfd 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLY A:411 A:411 1.0 0.013 T -51.7 133.0 1.0 0.013 0.0 FAD
OAA
HOH
 5.266
3.626
6.020
 C
CA
N
 O2
O1
O
3sfe 1 Q0QF01 96.3 0.0 X-RAY
 2011-09-07 GLY A:411 A:411 1.0 0.013 T -64.4 131.9 1.0 0.013 0.0 FAD
OAA
 5.309
3.983
 C
C
 O2
O1
1yq3 1 Q9YHT1 91.79 0.0 X-RAY
 2005-12-20 GLY A:410 A:410 0.0 0.0 T -57.4 146.9 0.0 0.0 0.0 FAD
TEO
HOH
 4.876
3.332
2.692
 C
CA
O
 O2
O4B
O
1yq4 1 50736125 91.79 0.0 X-RAY
 2005-12-20 GLY A:410 A:410 0.0 0.0 T -53.2 142.4 0.0 0.0 0.0 FAD
3NP
HOH
 4.900
3.967
2.930
 C
CA
N
 O2
C3
O
2fbw 1 F1NPJ4 91.79 0.0 X-RAY
 2005-12-20 GLY A:410 A:410 1.0 0.013 T -49.1 138.5 1.0 0.013 0.0 FAD
Y3P
UNL
HOH
 4.829
3.304
9.660
2.664
 C
CA
N
O
 O2
O5
OAA
O
GLY E:410 N:410 1.0 0.013 T -52.1 139.4 NA NA NA
2h88 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLY A:410 A:410 1.0 0.013 T -54.3 145.0 1.0 0.013 0.0 FAD
TEO
HOH
 4.904
3.324
2.777
 C
CA
O
 O2
O4A
O
GLY E:410 N:410 1.0 0.013 T -55.7 146.3 NA NA NA
2h89 1 Q9YHT1 91.79 0.0 X-RAY
 2006-06-20 GLY A:410 A:410 1.0 0.013 T -53.0 133.2 1.0 0.013 0.0 FAD
MLI
HOH
 4.969
3.841
4.247
 C
CA
N
 O2
O9
O
2wqy 1 Q9YHT1 91.79 0.0 X-RAY
 2010-08-25 GLY A:410 A:410 1.0 0.013 T -52.7 145.0 1.0 0.013 0.0 FAD
OAA
HOH
 4.885
3.242
2.723
 C
CA
O
 O2
O2
O
GLY E:410 N:410 1.0 0.013 T -51.3 145.1 NA NA NA
6myo 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLY A:410 A:410 1.0 0.013 T -50.2 135.3 1.0 0.013 0.0 FAD
OAA
HOH
 5.126
3.573
2.304
 C
C
O
 O2
O2
O
6myp 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLY A:410 A:410 1.0 0.013 T -59.4 147.0 1.0 0.013 0.0 FAD
OAA
HOH
 4.955
3.356
2.431
 C
CA
O
 O2
O2
O
6myq 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLY A:410 A:410 1.0 0.013 T -56.2 147.1 1.0 0.013 0.0 FAD
Y3P
HOH
 4.855
3.166
2.641
 C
CA
O
 O2
O5
O
6myr 1 F1NPJ4 91.79 0.0 X-RAY
 2019-10-16 GLY A:410 A:410 0.0 0.0 T -55.5 144.6 0.0 0.0 0.0 FAD
OAA
HOH
 4.989
3.603
5.832
 C
CA
N
 O2
O2
O
6mys 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLY A:410 A:410 1.0 0.013 T -61.5 144.7 1.0 0.013 0.0 FAD
OAA
HOH
 4.993
3.491
6.724
 C
CA
O
 O2
O2
O
6myt 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLY A:410 A:410 1.0 0.013 T -59.8 145.2 1.0 0.013 0.0 FAD
OAA
UNL
HOH
 4.914
3.555
2.321
2.881
 C
CA
O
N
 O2
O2
O
O
6myu 1 F1NPJ4 91.79 0.0 X-RAY
 2019-11-06 GLY A:410 A:410 0.0 0.0 T -54.2 143.8 0.0 0.0 0.0 FAD
OAA
HOH
 4.966
3.198
2.486
 C
CA
O
 O2
O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p31040-f1 1 P31040 100.0 0.0 GLY A:453 A:453 0.0 0.0 T -57.2 146.0